Variant report

Variant	rs9871934
Chromosome Location	chr3:46139808-46139809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46133083..46135714-chr3:46137874..46140788,3	K562	blood:
2	chr3:46134509..46136387-chr3:46138174..46140252,2	MCF-7	breast:
3	chr3:46129217..46131683-chr3:46137784..46140762,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10049103	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1078355	0.91[AMR][1000 genomes]
rs12107160	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12107288	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13325425	1.00[EUR][1000 genomes]
rs1352880	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1491951	0.83[AFR][1000 genomes]
rs1491954	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1846618	1.00[EUR][1000 genomes]
rs1873615	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2036294	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2036296	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2088691	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28393246	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28454181	1.00[EUR][1000 genomes]
rs4630978	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682809	0.82[YRI][hapmap]
rs55743140	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56071453	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56738797	0.91[AMR][1000 genomes]
rs57375372	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57590663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57768435	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57800045	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57887195	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58139750	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58402224	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58969771	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59065510	1.00[EUR][1000 genomes]
rs59157393	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59676542	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59754516	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60080146	0.91[AMR][1000 genomes]
rs61201782	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61276379	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61598729	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61686943	1.00[EUR][1000 genomes]
rs6788758	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791693	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6794222	1.00[EUR][1000 genomes]
rs6795629	0.81[YRI][hapmap]
rs6798934	0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72885402	0.91[AMR][1000 genomes]
rs72887108	0.91[AMR][1000 genomes]
rs72887131	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887154	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889737	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889749	0.80[AFR][1000 genomes]
rs72889759	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72891111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72891128	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72891129	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899100	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72904134	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830713	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833519	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7427033	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs978316	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs978317	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9814908	0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9830945	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9831926	0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9844424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9852295	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9854654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9859291	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9882976	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46129200-46147400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:46129400-46154200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:46129800-46140000	Enhancers	Fetal Thymus	thymus
4	chr3:46130200-46141200	Enhancers	Primary B cells from peripheral blood	blood
5	chr3:46130600-46143000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:46131400-46152200	Weak transcription	Pancreas	Pancrea
7	chr3:46132000-46140200	Enhancers	Primary hematopoietic stem cells	blood
8	chr3:46136800-46143200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:46137400-46142600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr3:46137600-46140400	Enhancers	Spleen	Spleen
11	chr3:46137600-46141000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr3:46137600-46141200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr3:46138000-46140400	Enhancers	Adipose Nuclei	Adipose
14	chr3:46138000-46140400	Enhancers	NHLF	lung
15	chr3:46138000-46140600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr3:46138000-46140600	Enhancers	NHDF-Ad	bronchial
17	chr3:46138000-46140800	Enhancers	Placenta	Placenta
18	chr3:46138000-46141000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:46138000-46141200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:46138200-46140000	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr3:46138200-46140400	Enhancers	Colon Smooth Muscle	Colon
22	chr3:46138200-46142800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr3:46138400-46141000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr3:46138600-46140400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:46138600-46140400	Enhancers	Colonic Mucosa	Colon
26	chr3:46138800-46140400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:46138800-46140400	Enhancers	Stomach Mucosa	stomach
28	chr3:46138800-46140600	Enhancers	Fetal Intestine Small	intestine
29	chr3:46138800-46140600	Enhancers	Hela-S3	cervix
30	chr3:46138800-46140800	Enhancers	Small Intestine	intestine
31	chr3:46138800-46141000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr3:46138800-46141000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr3:46138800-46141000	Enhancers	Fetal Intestine Large	intestine
34	chr3:46138800-46141000	Enhancers	Osteobl	bone
35	chr3:46139000-46140400	Enhancers	Muscle Satellite Cultured Cells	--
36	chr3:46139000-46140400	Enhancers	Placenta Amnion	Placenta Amnion
37	chr3:46139000-46140400	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr3:46139000-46140400	Enhancers	HSMMtube	muscle
39	chr3:46139000-46140600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:46139000-46140600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr3:46139000-46140600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:46139000-46140600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr3:46139000-46140600	Enhancers	HMEC	breast
44	chr3:46139000-46140600	Enhancers	HSMM	muscle
45	chr3:46139000-46140800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:46139000-46140800	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr3:46139000-46140800	Enhancers	Thymus	Thymus
48	chr3:46139200-46140800	Enhancers	Duodenum Mucosa	Duodenum
49	chr3:46139200-46150600	Weak transcription	Lung	lung
50	chr3:46139400-46140000	Weak transcription	HepG2	liver

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