Variant report

Variant	rs9882976
Chromosome Location	chr3:46095521-46095522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46095387..46098200-chr3:46100479..46102760,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10049103	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1078355	0.91[AMR][1000 genomes]
rs12107160	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12107288	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13325425	1.00[EUR][1000 genomes]
rs1352880	1.00[EUR][1000 genomes]
rs1491954	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1846618	1.00[EUR][1000 genomes]
rs1873615	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2036294	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2036296	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2088691	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28393246	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28454181	1.00[EUR][1000 genomes]
rs4630978	1.00[EUR][1000 genomes]
rs55743140	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56071453	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56738797	0.91[AMR][1000 genomes]
rs57375372	1.00[EUR][1000 genomes]
rs57590663	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57768435	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57800045	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57887195	1.00[EUR][1000 genomes]
rs58139750	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58402224	1.00[EUR][1000 genomes]
rs58969771	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59065510	1.00[EUR][1000 genomes]
rs59157393	1.00[EUR][1000 genomes]
rs59676542	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59754516	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60080146	0.91[AMR][1000 genomes]
rs61201782	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61276379	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61598729	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61686943	1.00[EUR][1000 genomes]
rs6788758	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791693	0.80[AMR][1000 genomes]
rs6794222	1.00[EUR][1000 genomes]
rs6798934	1.00[EUR][1000 genomes]
rs72885402	0.91[AMR][1000 genomes]
rs72887108	0.91[AMR][1000 genomes]
rs72887131	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887154	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72889737	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889759	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72891111	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72891128	1.00[EUR][1000 genomes]
rs72891129	1.00[EUR][1000 genomes]
rs72899100	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72904134	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830713	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833519	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7427033	1.00[EUR][1000 genomes]
rs978316	1.00[EUR][1000 genomes]
rs978317	1.00[EUR][1000 genomes]
rs9814908	1.00[EUR][1000 genomes]
rs9830945	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9831926	1.00[EUR][1000 genomes]
rs9844424	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9852295	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9854654	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9859291	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9871934	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46087600-46095800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:46094200-46096200	Enhancers	Placenta	Placenta
3	chr3:46095200-46096000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr3:46095200-46096400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:46095400-46096600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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