Variant report

Variant	rs72904134
Chromosome Location	chr3:46167583-46167584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46167391..46169192-chr3:46171465..46173672,2	K562	blood:
2	chr3:46165088..46167964-chr3:46179525..46182500,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10049103	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1078355	0.91[AMR][1000 genomes]
rs12107160	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12107288	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13325425	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1352880	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1491954	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1846618	1.00[EUR][1000 genomes]
rs1873615	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2036294	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2036296	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2088691	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28393246	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28454181	1.00[EUR][1000 genomes]
rs4630978	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55743140	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56071453	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56738797	0.91[AMR][1000 genomes]
rs57375372	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57590663	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57768435	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57800045	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57887195	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58139750	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58402224	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58969771	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59065510	1.00[EUR][1000 genomes]
rs59157393	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59676542	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59754516	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60080146	0.91[AMR][1000 genomes]
rs61201782	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61276379	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61598729	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61686943	1.00[EUR][1000 genomes]
rs6788758	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791693	0.83[AMR][1000 genomes]
rs6798934	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72885402	0.91[AMR][1000 genomes]
rs72887108	0.91[AMR][1000 genomes]
rs72887131	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887154	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889737	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889759	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72891111	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72891128	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72891129	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899100	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73830713	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833519	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7427033	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs978316	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs978317	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9814908	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9830945	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9831926	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9844424	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9852295	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9854654	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9859291	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9871934	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9882976	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46156800-46168000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:46157200-46168600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:46161400-46169400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:46162800-46168800	Weak transcription	HMEC	breast
5	chr3:46164000-46171000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:46165400-46170800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:46165800-46168600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:46165800-46169000	Weak transcription	Dnd41	blood
9	chr3:46166000-46170800	Weak transcription	Spleen	Spleen
10	chr3:46166200-46168600	Weak transcription	Hela-S3	cervix
11	chr3:46166200-46171200	Weak transcription	Primary B cells from cord blood	blood
12	chr3:46166400-46169000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:46166400-46170600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:46166600-46167800	Weak transcription	NHLF	lung
15	chr3:46166600-46168000	Weak transcription	NHDF-Ad	bronchial
16	chr3:46166600-46172600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr3:46166800-46168800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr3:46166800-46168800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr3:46166800-46171400	Weak transcription	Placenta	Placenta
20	chr3:46167000-46168400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:46167000-46168600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:46167000-46168800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:46167000-46169400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:46167000-46171000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr3:46167000-46171800	Weak transcription	Adipose Nuclei	Adipose
26	chr3:46167000-46175600	Weak transcription	Fetal Lung	lung

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