Variant report

Variant	rs1854538
Chromosome Location	chr10:93348258-93348259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93342049..93343770-chr10:93347072..93349314,2	K562	blood:
2	chr10:93346595..93350402-chr10:93367133..93369211,4	K562	blood:
3	chr10:93346562..93349330-chr10:93365146..93366773,2	K562	blood:
4	chr10:93348105..93349991-chr10:93353710..93355230,2	MCF-7	breast:
5	chr10:93347598..93350963-chr10:93361481..93364970,4	K562	blood:
6	chr10:75757594..75758345-chr10:93348053..93349045,2	Hela-S3	cervix:
7	chr10:93347325..93349831-chr10:93667659..93669319,2	K562	blood:
8	chr10:93343792..93345929-chr10:93347595..93350391,2	MCF-7	breast:
9	chr10:93347896..93349521-chr10:93352949..93355020,2	K562	blood:
10	chr10:93341976..93343770-chr10:93346348..93349314,3	K562	blood:
11	chr10:93347950..93349480-chr10:93389392..93391120,2	MCF-7	breast:
12	chr10:93346543..93348493-chr10:93350509..93352475,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction
ENSG00000035403	Chromatin interaction
ENSG00000272817	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10509627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249077	1.00[YRI][hapmap]
rs12571372	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573462	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17473770	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17558637	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2210044	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55788052	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55934444	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56387205	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56397936	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819256	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819257	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72819262	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819265	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819266	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819267	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821223	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821225	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821226	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821227	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821229	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821233	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93345200-93349800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr10:93345400-93348600	Enhancers	Fetal Heart	heart
3	chr10:93346400-93351400	Enhancers	Aorta	Aorta
4	chr10:93346600-93348600	Weak transcription	Left Ventricle	heart
5	chr10:93346600-93350600	Weak transcription	Brain Substantia Nigra	brain
6	chr10:93346800-93350400	Enhancers	Fetal Lung	lung
7	chr10:93346800-93352200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:93346800-93352400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:93346800-93354600	Enhancers	Fetal Muscle Leg	muscle
10	chr10:93347000-93358800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:93347200-93351600	Enhancers	Psoas Muscle	Psoas
12	chr10:93347400-93348400	Flanking Active TSS	K562	blood
13	chr10:93347400-93348600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:93347400-93348600	Enhancers	Colon Smooth Muscle	Colon
15	chr10:93347400-93349200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:93347400-93349400	Enhancers	NHEK	skin
17	chr10:93347400-93350000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:93347400-93350600	Enhancers	HSMMtube	muscle
19	chr10:93347400-93351800	Flanking Active TSS	Hela-S3	cervix
20	chr10:93347400-93352200	Enhancers	HUVEC	blood vessel
21	chr10:93347400-93352600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:93347400-93352800	Enhancers	HSMM	muscle
23	chr10:93347400-93352800	Enhancers	NHLF	lung
24	chr10:93347400-93353400	Enhancers	Ovary	ovary
25	chr10:93347400-93353800	Enhancers	Pancreas	Pancrea
26	chr10:93347400-93354400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr10:93347600-93348400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:93347600-93348400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:93347600-93348400	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr10:93347600-93348600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr10:93347600-93348600	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr10:93347600-93348600	Flanking Active TSS	Osteobl	bone
33	chr10:93347600-93348800	Enhancers	HMEC	breast
34	chr10:93347600-93348800	Flanking Active TSS	NH-A	brain
35	chr10:93347600-93351000	Enhancers	Rectal Smooth Muscle	rectum
36	chr10:93347600-93351200	Enhancers	Right Ventricle	heart
37	chr10:93347600-93351800	Flanking Active TSS	A549	lung
38	chr10:93347600-93352600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr10:93347600-93353200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:93347600-93353400	Enhancers	Right Atrium	heart
41	chr10:93347600-93358800	Enhancers	Fetal Stomach	stomach
42	chr10:93347800-93348600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:93347800-93348600	Weak transcription	Placenta	Placenta
44	chr10:93347800-93349200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:93348000-93348400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:93348000-93348400	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr10:93348000-93348600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:93348000-93349000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr10:93348000-93351800	Enhancers	Brain Anterior Caudate	brain
50	chr10:93348200-93348400	Enhancers	Colonic Mucosa	Colon

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