Variant report

Variant	rs72821227
Chromosome Location	chr10:93347170-93347171
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93342049..93343770-chr10:93347072..93349314,2	K562	blood:
2	chr10:93346595..93350402-chr10:93367133..93369211,4	K562	blood:
3	chr10:93337791..93340748-chr10:93344667..93347663,2	K562	blood:
4	chr10:93346562..93349330-chr10:93365146..93366773,2	K562	blood:
5	chr10:93345296..93347976-chr10:93501392..93503311,2	K562	blood:
6	chr10:93341976..93343770-chr10:93346348..93349314,3	K562	blood:
7	chr10:93346543..93348493-chr10:93350509..93352475,2	K562	blood:
8	chr10:93336246..93341378-chr10:93343790..93348157,8	K562	blood:

No data

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10509627	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573462	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329651	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17473770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17558637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1854538	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2210044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55788052	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55934444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56387205	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56397936	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819256	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72819262	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821229	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821233	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs72821227	TNKS2-AS1	cis	Heart Left Ventricle	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93327800-93347400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:93335000-93347600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:93342200-93347600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:93342400-93347400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:93342400-93347400	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:93342600-93347400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:93342800-93347400	Weak transcription	HSMMtube	muscle
8	chr10:93343000-93347400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:93343000-93348200	Weak transcription	Fetal Intestine Large	intestine
10	chr10:93345200-93349800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:93345400-93348600	Enhancers	Fetal Heart	heart
12	chr10:93346000-93347600	Weak transcription	Right Ventricle	heart
13	chr10:93346200-93347400	Enhancers	Hela-S3	cervix
14	chr10:93346200-93348200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:93346400-93351400	Enhancers	Aorta	Aorta
16	chr10:93346600-93348600	Weak transcription	Left Ventricle	heart
17	chr10:93346600-93350600	Weak transcription	Brain Substantia Nigra	brain
18	chr10:93346800-93347200	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr10:93346800-93347200	Weak transcription	Psoas Muscle	Psoas
20	chr10:93346800-93347600	Enhancers	Stomach Smooth Muscle	stomach
21	chr10:93346800-93350400	Enhancers	Fetal Lung	lung
22	chr10:93346800-93352200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:93346800-93352400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:93346800-93354600	Enhancers	Fetal Muscle Leg	muscle
25	chr10:93347000-93358800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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