Variant report

Variant	rs72821233
Chromosome Location	chr10:93349867-93349868
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93348429..93351278-chr10:93370659..93373317,2	K562	blood:
2	chr10:93346595..93350402-chr10:93367133..93369211,4	K562	blood:
3	chr10:93348105..93349991-chr10:93353710..93355230,2	MCF-7	breast:
4	chr10:93347598..93350963-chr10:93361481..93364970,4	K562	blood:
5	chr10:93348521..93350817-chr10:93361481..93363972,2	K562	blood:
6	chr10:93343792..93345929-chr10:93347595..93350391,2	MCF-7	breast:
7	chr10:93338295..93340668-chr10:93348531..93350800,2	MCF-7	breast:
8	chr10:93349706..93352465-chr10:93354064..93358504,5	K562	blood:
9	chr10:93349778..93351711-chr10:93371480..93373317,2	K562	blood:

No data

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10509627	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12571372	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12573462	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1329651	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17473770	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17558637	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1854538	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2210044	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55788052	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55934444	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56387205	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56397936	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72819256	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72819257	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72819262	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72819265	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72819266	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72819267	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72821223	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72821225	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72821226	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72821227	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72821229	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93346400-93351400	Enhancers	Aorta	Aorta
2	chr10:93346600-93350600	Weak transcription	Brain Substantia Nigra	brain
3	chr10:93346800-93350400	Enhancers	Fetal Lung	lung
4	chr10:93346800-93352200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:93346800-93352400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:93346800-93354600	Enhancers	Fetal Muscle Leg	muscle
7	chr10:93347000-93358800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:93347200-93351600	Enhancers	Psoas Muscle	Psoas
9	chr10:93347400-93350000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:93347400-93350600	Enhancers	HSMMtube	muscle
11	chr10:93347400-93351800	Flanking Active TSS	Hela-S3	cervix
12	chr10:93347400-93352200	Enhancers	HUVEC	blood vessel
13	chr10:93347400-93352600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:93347400-93352800	Enhancers	HSMM	muscle
15	chr10:93347400-93352800	Enhancers	NHLF	lung
16	chr10:93347400-93353400	Enhancers	Ovary	ovary
17	chr10:93347400-93353800	Enhancers	Pancreas	Pancrea
18	chr10:93347400-93354400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr10:93347600-93351000	Enhancers	Rectal Smooth Muscle	rectum
20	chr10:93347600-93351200	Enhancers	Right Ventricle	heart
21	chr10:93347600-93351800	Flanking Active TSS	A549	lung
22	chr10:93347600-93352600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:93347600-93353200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:93347600-93353400	Enhancers	Right Atrium	heart
25	chr10:93347600-93358800	Enhancers	Fetal Stomach	stomach
26	chr10:93348000-93351800	Enhancers	Brain Anterior Caudate	brain
27	chr10:93348200-93350000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:93348200-93351400	Enhancers	Fetal Intestine Large	intestine
29	chr10:93348200-93351400	Enhancers	NHDF-Ad	bronchial
30	chr10:93348200-93351600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:93348200-93352000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr10:93348200-93358800	Enhancers	Fetal Intestine Small	intestine
33	chr10:93348400-93350800	Enhancers	K562	blood
34	chr10:93348400-93351600	Enhancers	Adipose Nuclei	Adipose
35	chr10:93348400-93352800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:93348400-93352800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:93348600-93350000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:93348600-93350000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr10:93348600-93350600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:93348600-93350600	Flanking Active TSS	Fetal Heart	heart
41	chr10:93348600-93351600	Enhancers	Placenta	Placenta
42	chr10:93348600-93351600	Enhancers	Left Ventricle	heart
43	chr10:93348600-93352200	Enhancers	Osteobl	bone
44	chr10:93348800-93350000	Weak transcription	HMEC	breast
45	chr10:93348800-93351800	Enhancers	NH-A	brain
46	chr10:93348800-93352400	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr10:93348800-93353000	Enhancers	Stomach Mucosa	stomach
48	chr10:93349000-93350000	Weak transcription	Fetal Kidney	kidney
49	chr10:93349000-93350600	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr10:93349000-93351400	Enhancers	Duodenum Mucosa	Duodenum

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