Variant report

Variant	rs56387205
Chromosome Location	chr10:93351723-93351724
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93350580..93353004-chr10:93359204..93360922,2	K562	blood:
2	chr10:93346543..93348493-chr10:93350509..93352475,2	K562	blood:
3	chr10:93349706..93352465-chr10:93354064..93358504,5	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10509627	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12571372	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12573462	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1329651	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17473770	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17558637	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1854538	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2210044	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55788052	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55934444	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56397936	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72819256	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72819257	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72819262	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72819265	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72819266	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72819267	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72821223	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72821225	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72821226	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72821227	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72821229	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72821233	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93346800-93352200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:93346800-93352400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:93346800-93354600	Enhancers	Fetal Muscle Leg	muscle
4	chr10:93347000-93358800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:93347400-93351800	Flanking Active TSS	Hela-S3	cervix
6	chr10:93347400-93352200	Enhancers	HUVEC	blood vessel
7	chr10:93347400-93352600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:93347400-93352800	Enhancers	HSMM	muscle
9	chr10:93347400-93352800	Enhancers	NHLF	lung
10	chr10:93347400-93353400	Enhancers	Ovary	ovary
11	chr10:93347400-93353800	Enhancers	Pancreas	Pancrea
12	chr10:93347400-93354400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr10:93347600-93351800	Flanking Active TSS	A549	lung
14	chr10:93347600-93352600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:93347600-93353200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:93347600-93353400	Enhancers	Right Atrium	heart
17	chr10:93347600-93358800	Enhancers	Fetal Stomach	stomach
18	chr10:93348000-93351800	Enhancers	Brain Anterior Caudate	brain
19	chr10:93348200-93352000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr10:93348200-93358800	Enhancers	Fetal Intestine Small	intestine
21	chr10:93348400-93352800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:93348400-93352800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:93348600-93352200	Enhancers	Osteobl	bone
24	chr10:93348800-93351800	Enhancers	NH-A	brain
25	chr10:93348800-93352400	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr10:93348800-93353000	Enhancers	Stomach Mucosa	stomach
27	chr10:93349000-93352000	Enhancers	HepG2	liver
28	chr10:93349000-93352400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:93349000-93352400	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr10:93349000-93353400	Enhancers	Fetal Muscle Trunk	muscle
31	chr10:93349000-93356200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr10:93349200-93354800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:93349400-93351800	Enhancers	Colonic Mucosa	Colon
34	chr10:93349400-93356200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr10:93349600-93352400	Enhancers	Fetal Brain Male	brain
36	chr10:93349600-93352800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr10:93349600-93353200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:93349800-93351800	Enhancers	Fetal Brain Female	brain
39	chr10:93349800-93352800	Enhancers	Brain Germinal Matrix	brain
40	chr10:93350000-93351800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:93350600-93352200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:93350800-93352800	Enhancers	Muscle Satellite Cultured Cells	--
43	chr10:93350800-93353000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:93351000-93352400	Weak transcription	Small Intestine	intestine
45	chr10:93351000-93352800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:93351000-93356400	Weak transcription	HMEC	breast
47	chr10:93351200-93351800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr10:93351200-93352400	Weak transcription	NHEK	skin
49	chr10:93351200-93353000	Weak transcription	Right Ventricle	heart
50	chr10:93351200-93356400	Weak transcription	Brain Substantia Nigra	brain

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