Variant report

Variant	rs1856352
Chromosome Location	chr6:132781043-132781044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132780465..132785499-chr6:132786072..132789592,5	K562	blood:
2	chr6:132780979..132783540-chr6:132797248..132799636,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17061361	1.00[CEU][hapmap]
rs17192117	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4895941	1.00[CEU][hapmap]
rs4897588	1.00[CEU][hapmap]
rs4897589	1.00[CEU][hapmap]
rs62424914	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6906663	1.00[CEU][hapmap]
rs6936401	1.00[CEU][hapmap]
rs6939077	1.00[CEU][hapmap]
rs7757421	1.00[CEU][hapmap]
rs7758170	1.00[CEU][hapmap]
rs9483468	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132765400-132782400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:132765600-132791000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:132766600-132792400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:132768000-132799600	Weak transcription	Psoas Muscle	Psoas
5	chr6:132768200-132782600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:132768200-132783200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:132770000-132785800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:132770600-132796800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr6:132771000-132786400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:132771200-132782600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:132771200-132796800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr6:132773400-132785800	Weak transcription	A549	lung
13	chr6:132774000-132783000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:132774000-132790400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:132774400-132785400	Strong transcription	HSMM	muscle
16	chr6:132774800-132785200	Strong transcription	Placenta	Placenta
17	chr6:132774800-132793000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:132775000-132783200	Weak transcription	Fetal Thymus	thymus
19	chr6:132775000-132792600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:132775400-132785800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:132775400-132786000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:132775400-132786800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:132776000-132786000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:132776000-132794600	Strong transcription	Fetal Intestine Large	intestine
25	chr6:132776200-132783200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:132776400-132786000	Strong transcription	Adipose Nuclei	Adipose
27	chr6:132776600-132783200	Weak transcription	Thymus	Thymus
28	chr6:132776600-132785200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:132776600-132785800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:132776600-132793600	Strong transcription	Liver	Liver
31	chr6:132776600-132793600	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:132776800-132796800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:132777000-132781200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:132777000-132792600	Weak transcription	Hela-S3	cervix
35	chr6:132777000-132793600	Strong transcription	Duodenum Mucosa	Duodenum
36	chr6:132777200-132785200	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr6:132777600-132785400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:132777800-132783200	Weak transcription	Brain Germinal Matrix	brain
39	chr6:132777800-132785200	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:132777800-132792800	Strong transcription	Stomach Smooth Muscle	stomach
41	chr6:132777800-132794000	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr6:132778000-132781800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:132778000-132783200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr6:132778000-132783200	Weak transcription	Brain Angular Gyrus	brain
45	chr6:132778000-132785000	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:132778000-132791400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr6:132778000-132799400	Weak transcription	Fetal Heart	heart
48	chr6:132778200-132785000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:132778200-132785200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:132778200-132810800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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