Variant report

Variant	rs7758170
Chromosome Location	chr6:132825982-132825983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132821641..132824137-chr6:132824492..132826166,2	MCF-7	breast:
2	chr6:132824647..132827270-chr6:132833444..132836391,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000079950	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17061361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17192117	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs1856352	1.00[CEU][hapmap]
rs4895940	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4895941	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4897588	0.85[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4897589	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58115479	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62424914	0.88[EUR][1000 genomes]
rs62424917	0.97[EUR][1000 genomes]
rs62424918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424919	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424931	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424933	1.00[ASN][1000 genomes]
rs62424934	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62424935	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6569804	0.86[ASN][1000 genomes]
rs6906663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909378	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924741	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6931831	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936401	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6939077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758434	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483468	1.00[CEU][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9483470	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9483473	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493339	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493342	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493343	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493344	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493345	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132811600-132826000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:132811600-132832200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:132812800-132828800	Weak transcription	Fetal Brain Male	brain
4	chr6:132812800-132832000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:132813000-132833600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:132813200-132826800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:132817400-132831800	Genic enhancers	Primary B cells from peripheral blood	blood
8	chr6:132818200-132826000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:132818200-132832400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:132820600-132832000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:132820800-132829400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:132821200-132832000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:132821400-132826400	Genic enhancers	Primary B cells from cord blood	blood
14	chr6:132821600-132826000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:132821600-132826600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:132821800-132829000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:132821800-132832200	Weak transcription	A549	lung
18	chr6:132822800-132831800	Weak transcription	K562	blood
19	chr6:132823000-132826000	Weak transcription	Right Ventricle	heart
20	chr6:132823000-132832200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr6:132823200-132826000	Weak transcription	Aorta	Aorta
22	chr6:132823200-132826000	Weak transcription	Esophagus	oesophagus
23	chr6:132823200-132826000	Weak transcription	Spleen	Spleen
24	chr6:132823200-132827000	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr6:132823200-132830000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr6:132823200-132832000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:132823200-132832200	Weak transcription	Thymus	Thymus
28	chr6:132823200-132832400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:132823200-132832400	Weak transcription	HSMMtube	muscle
30	chr6:132823400-132828600	Weak transcription	Fetal Lung	lung
31	chr6:132823400-132829000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr6:132823400-132831800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr6:132823400-132831800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:132823400-132832000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr6:132823400-132832000	Weak transcription	NHLF	lung
36	chr6:132823400-132832200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:132823400-132832200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr6:132823400-132832200	Weak transcription	Colonic Mucosa	Colon
39	chr6:132823400-132832400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr6:132823600-132826200	Weak transcription	Brain Germinal Matrix	brain
41	chr6:132823600-132827600	Weak transcription	HMEC	breast
42	chr6:132823600-132831800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:132823600-132832200	Weak transcription	Liver	Liver
44	chr6:132823600-132832400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr6:132823600-132832400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:132823800-132831600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr6:132823800-132831800	Weak transcription	HepG2	liver
48	chr6:132824000-132829000	Weak transcription	Fetal Muscle Trunk	muscle
49	chr6:132824000-132829000	Weak transcription	Fetal Muscle Leg	muscle
50	chr6:132824000-132829200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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