Variant report

Variant	rs7758434
Chromosome Location	chr6:132833381-132833382
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:132833194..132835178-chr6:133134140..133136704,2	MCF-7	breast:
2	chr6:132832611..132834291-chr6:133118787..133121672,2	K562	blood:
3	chr6:132832429..132834669-chr6:133134284..133137002,3	K562	blood:

Variant related genes	Relation type
ENSG00000112306	Chromatin interaction
ENSG00000146409	Chromatin interaction
ENSG00000206754	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17061361	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17192117	0.86[EUR][1000 genomes]
rs4895940	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4895941	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4897588	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4897589	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58115479	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62424914	0.88[EUR][1000 genomes]
rs62424917	0.97[EUR][1000 genomes]
rs62424918	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424919	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424931	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424933	1.00[ASN][1000 genomes]
rs62424934	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62424935	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6569804	0.86[ASN][1000 genomes]
rs6906663	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924741	1.00[ASN][1000 genomes]
rs6931831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936401	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6939077	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758170	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483468	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9483470	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9483473	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493339	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493342	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493344	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132813000-132833600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:132824600-132833400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:132826800-132833600	Weak transcription	Gastric	stomach
4	chr6:132829400-132833600	Weak transcription	Spleen	Spleen
5	chr6:132829800-132833600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:132829800-132833600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:132829800-132833600	Weak transcription	Left Ventricle	heart
8	chr6:132829800-132833600	Weak transcription	Lung	lung
9	chr6:132830000-132833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:132830000-132834600	Active TSS	GM12878-XiMat	blood
11	chr6:132830600-132834800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:132831600-132833400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:132831800-132833400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:132831800-132833400	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr6:132831800-132833400	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr6:132831800-132833400	Flanking Active TSS	Fetal Brain Female	brain
17	chr6:132831800-132833600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:132832000-132833400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr6:132832000-132833400	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr6:132832000-132833400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr6:132832000-132833400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:132832000-132834600	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr6:132832000-132835000	Active TSS	Stomach Smooth Muscle	stomach
24	chr6:132832200-132833400	Enhancers	Fetal Heart	heart
25	chr6:132832200-132833600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:132832200-132833800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:132832200-132834400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:132832200-132835000	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr6:132832400-132833400	Flanking Active TSS	Osteobl	bone
30	chr6:132832400-132833600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr6:132832400-132834600	Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr6:132832600-132833400	Flanking Active TSS	Liver	Liver
33	chr6:132832600-132833400	Flanking Active TSS	Dnd41	blood
34	chr6:132832600-132833600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:132832600-132833600	Weak transcription	Pancreas	Pancrea
36	chr6:132832600-132833800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:132832600-132834400	Active TSS	HMEC	breast
38	chr6:132832600-132834600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:132832600-132834600	Active TSS	Fetal Intestine Large	intestine
40	chr6:132832600-132834800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:132832600-132834800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:132832600-132834800	Active TSS	Aorta	Aorta
43	chr6:132832600-132834800	Active TSS	Colonic Mucosa	Colon
44	chr6:132832600-132834800	Active TSS	Fetal Brain Male	brain
45	chr6:132832600-132834800	Active TSS	Placenta	Placenta
46	chr6:132832600-132834800	Active TSS	Fetal Stomach	stomach
47	chr6:132832600-132834800	Active TSS	Psoas Muscle	Psoas
48	chr6:132832600-132834800	Active TSS	Right Ventricle	heart
49	chr6:132832600-132834800	Active TSS	Sigmoid Colon	Sigmoid Colon
50	chr6:132832600-132835000	Active TSS	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links