Variant report

Variant	rs4897589
Chromosome Location	chr6:132822933-132822934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132821641..132824137-chr6:132824492..132826166,2	MCF-7	breast:
2	chr6:132821429..132823264-chr6:132828762..132830437,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17061361	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17192117	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1856352	1.00[CEU][hapmap]
rs4895940	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58115479	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62424914	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62424917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62424918	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62424919	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62424931	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62424933	0.86[ASN][1000 genomes]
rs62424934	0.91[EUR][1000 genomes]
rs62424935	0.94[EUR][1000 genomes]
rs6569804	1.00[ASN][1000 genomes]
rs6906663	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6909378	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6924741	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6931831	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6936401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6939077	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7757421	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7758170	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7758434	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9483468	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483470	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9483473	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9493339	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9493342	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9493343	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9493344	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9493345	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132811600-132826000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:132811600-132832200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:132812800-132823000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:132812800-132828800	Weak transcription	Fetal Brain Male	brain
5	chr6:132812800-132832000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:132813000-132833600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:132813200-132826800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:132813400-132825400	Weak transcription	Gastric	stomach
9	chr6:132813400-132825400	Weak transcription	Pancreas	Pancrea
10	chr6:132813600-132824800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:132814800-132825600	Weak transcription	Psoas Muscle	Psoas
12	chr6:132817400-132831800	Genic enhancers	Primary B cells from peripheral blood	blood
13	chr6:132817800-132823400	Strong transcription	Fetal Lung	lung
14	chr6:132817800-132824800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:132818000-132823400	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr6:132818000-132824800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:132818000-132824800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:132818200-132824800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:132818200-132826000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:132818200-132832400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:132818400-132824600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:132818400-132824600	Strong transcription	HSMM	muscle
23	chr6:132818400-132825000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:132818400-132825000	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr6:132818600-132823800	Strong transcription	HepG2	liver
26	chr6:132818600-132824000	Strong transcription	Primary T cells from cord blood	blood
27	chr6:132818600-132824800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:132818800-132824000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr6:132818800-132824400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:132819000-132824600	Strong transcription	HUVEC	blood vessel
31	chr6:132819000-132824800	Strong transcription	Fetal Brain Female	brain
32	chr6:132819200-132824600	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr6:132819600-132823200	Strong transcription	Dnd41	blood
34	chr6:132819800-132824600	Strong transcription	Fetal Intestine Large	intestine
35	chr6:132820000-132823200	Strong transcription	Aorta	Aorta
36	chr6:132820000-132823400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:132820000-132823800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr6:132820000-132824400	Strong transcription	Stomach Smooth Muscle	stomach
39	chr6:132820000-132824600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:132820000-132824600	Strong transcription	Osteobl	bone
41	chr6:132820200-132824600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:132820200-132824600	Strong transcription	Fetal Thymus	thymus
43	chr6:132820200-132825600	Weak transcription	Small Intestine	intestine
44	chr6:132820400-132823400	Strong transcription	Brain Hippocampus Middle	brain
45	chr6:132820400-132825400	Weak transcription	Fetal Heart	heart
46	chr6:132820600-132832000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr6:132820800-132824200	Strong transcription	Fetal Stomach	stomach
48	chr6:132820800-132829400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:132821000-132823200	Strong transcription	Left Ventricle	heart
50	chr6:132821000-132823200	Strong transcription	Lung	lung

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