Variant report

Variant	rs62424935
Chromosome Location	chr6:132836133-132836134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132835034..132837186-chr6:133135898..133138134,2	MCF-7	breast:
2	chr6:132832753..132835723-chr6:132836016..132838181,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206754	Chromatin interaction
ENSG00000079950	Chromatin interaction
ENSG00000221500	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17061361	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17192117	0.82[EUR][1000 genomes]
rs4895940	0.91[EUR][1000 genomes]
rs4895941	0.91[EUR][1000 genomes]
rs4897588	0.91[EUR][1000 genomes]
rs4897589	0.94[EUR][1000 genomes]
rs58115479	0.89[EUR][1000 genomes]
rs62424914	0.85[EUR][1000 genomes]
rs62424917	0.94[EUR][1000 genomes]
rs62424918	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62424919	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62424931	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62424933	0.90[ASN][1000 genomes]
rs62424934	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906663	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6909378	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6924741	0.90[ASN][1000 genomes]
rs6931831	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6936401	0.89[EUR][1000 genomes]
rs6939077	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7757421	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7758170	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7758434	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9483468	0.91[EUR][1000 genomes]
rs9483470	0.88[EUR][1000 genomes]
rs9483473	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9493339	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9493342	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9493343	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9493344	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9493345	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132834800-132837000	Enhancers	Osteobl	bone
2	chr6:132835000-132837000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:132835000-132837200	Enhancers	Placenta	Placenta
4	chr6:132835200-132836200	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:132835200-132836400	Enhancers	GM12878-XiMat	blood
6	chr6:132835400-132836200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr6:132835400-132836400	Enhancers	Fetal Intestine Small	intestine
8	chr6:132835400-132837200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:132835400-132837400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:132835600-132836800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:132835800-132837000	Enhancers	Fetal Heart	heart
12	chr6:132836000-132836400	Weak transcription	Adipose Nuclei	Adipose

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