Variant report

Variant	rs7757421
Chromosome Location	chr6:132833015-132833016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132832611..132834291-chr6:133118787..133121672,2	K562	blood:
2	chr6:132832429..132834669-chr6:133134284..133137002,3	K562	blood:

Variant related genes	Relation type
ENSG00000112306	Chromatin interaction
ENSG00000146409	Chromatin interaction
ENSG00000206754	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17061361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17192117	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs1856352	1.00[CEU][hapmap]
rs4895940	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4895941	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4897588	0.85[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4897589	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58115479	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62424914	0.88[EUR][1000 genomes]
rs62424917	0.97[EUR][1000 genomes]
rs62424918	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424919	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424931	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424933	1.00[ASN][1000 genomes]
rs62424934	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62424935	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6569804	0.86[ASN][1000 genomes]
rs6906663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924741	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6931831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936401	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6939077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483468	1.00[CEU][hapmap];0.92[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9483470	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9483473	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493339	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493342	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493344	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132813000-132833600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:132824600-132833400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:132826800-132833200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:132826800-132833600	Weak transcription	Gastric	stomach
5	chr6:132829400-132833600	Weak transcription	Spleen	Spleen
6	chr6:132829800-132833200	Weak transcription	Esophagus	oesophagus
7	chr6:132829800-132833600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:132829800-132833600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:132829800-132833600	Weak transcription	Left Ventricle	heart
10	chr6:132829800-132833600	Weak transcription	Lung	lung
11	chr6:132830000-132833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:132830000-132834600	Active TSS	GM12878-XiMat	blood
13	chr6:132830600-132834800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:132830800-132833200	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
15	chr6:132831600-132833400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:132831800-132833400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:132831800-132833400	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr6:132831800-132833400	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr6:132831800-132833400	Flanking Active TSS	Fetal Brain Female	brain
20	chr6:132831800-132833600	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr6:132832000-132833200	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr6:132832000-132833200	Flanking Active TSS	Brain Hippocampus Middle	brain
23	chr6:132832000-132833200	Flanking Active TSS	HUVEC	blood vessel
24	chr6:132832000-132833400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr6:132832000-132833400	Flanking Active TSS	Primary hematopoietic stem cells	blood
26	chr6:132832000-132833400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr6:132832000-132833400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:132832000-132834600	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr6:132832000-132835000	Active TSS	Stomach Smooth Muscle	stomach
30	chr6:132832200-132833200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr6:132832200-132833200	Flanking Active TSS	Brain Cingulate Gyrus	brain
32	chr6:132832200-132833200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr6:132832200-132833200	Flanking Active TSS	HepG2	liver
34	chr6:132832200-132833200	Flanking Active TSS	NHEK	skin
35	chr6:132832200-132833400	Enhancers	Fetal Heart	heart
36	chr6:132832200-132833600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:132832200-132833800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:132832200-132834400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:132832200-132835000	Active TSS	Brain Inferior Temporal Lobe	brain
40	chr6:132832400-132833200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:132832400-132833200	Flanking Active TSS	Brain Angular Gyrus	brain
42	chr6:132832400-132833200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:132832400-132833400	Flanking Active TSS	Osteobl	bone
44	chr6:132832400-132833600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:132832400-132834600	Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr6:132832600-132833200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:132832600-132833200	Flanking Active TSS	Fetal Lung	lung
48	chr6:132832600-132833200	Flanking Active TSS	Rectal Smooth Muscle	rectum
49	chr6:132832600-132833400	Flanking Active TSS	Liver	Liver
50	chr6:132832600-132833400	Flanking Active TSS	Dnd41	blood

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