Variant report

Variant	rs62424919
Chromosome Location	chr6:132828003-132828004
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132827964..132832472-chr6:132833175..132836743,4	MCF-7	breast:
2	chr6:132827063..132829166-chr6:132830599..132832214,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000079950	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17061361	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17192117	0.86[EUR][1000 genomes]
rs4895940	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4895941	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4897588	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4897589	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58115479	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62424914	0.88[EUR][1000 genomes]
rs62424917	0.97[EUR][1000 genomes]
rs62424918	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424931	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424933	1.00[ASN][1000 genomes]
rs62424934	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62424935	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6569804	0.86[ASN][1000 genomes]
rs6906663	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909378	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924741	1.00[ASN][1000 genomes]
rs6931831	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936401	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6939077	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757421	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758170	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758434	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483468	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9483470	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9483473	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493339	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493342	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493343	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493344	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493345	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132811600-132832200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:132812800-132828800	Weak transcription	Fetal Brain Male	brain
3	chr6:132812800-132832000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:132813000-132833600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:132817400-132831800	Genic enhancers	Primary B cells from peripheral blood	blood
6	chr6:132818200-132832400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:132820600-132832000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:132820800-132829400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:132821200-132832000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:132821800-132829000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:132821800-132832200	Weak transcription	A549	lung
12	chr6:132822800-132831800	Weak transcription	K562	blood
13	chr6:132823000-132832200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:132823200-132830000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:132823200-132832000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:132823200-132832200	Weak transcription	Thymus	Thymus
17	chr6:132823200-132832400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:132823200-132832400	Weak transcription	HSMMtube	muscle
19	chr6:132823400-132828600	Weak transcription	Fetal Lung	lung
20	chr6:132823400-132829000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr6:132823400-132831800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr6:132823400-132831800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:132823400-132832000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:132823400-132832000	Weak transcription	NHLF	lung
25	chr6:132823400-132832200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:132823400-132832200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:132823400-132832200	Weak transcription	Colonic Mucosa	Colon
28	chr6:132823400-132832400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr6:132823600-132831800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:132823600-132832200	Weak transcription	Liver	Liver
31	chr6:132823600-132832400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr6:132823600-132832400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:132823800-132831600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:132823800-132831800	Weak transcription	HepG2	liver
35	chr6:132824000-132829000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr6:132824000-132829000	Weak transcription	Fetal Muscle Leg	muscle
37	chr6:132824000-132829200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:132824000-132829200	Weak transcription	Primary T cells from cord blood	blood
39	chr6:132824200-132829000	Weak transcription	Fetal Stomach	stomach
40	chr6:132824200-132832200	Weak transcription	Placenta	Placenta
41	chr6:132824400-132831800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:132824600-132828200	Weak transcription	HSMM	muscle
43	chr6:132824600-132828600	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr6:132824600-132829000	Weak transcription	Osteobl	bone
45	chr6:132824600-132830800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr6:132824600-132831800	Weak transcription	Dnd41	blood
47	chr6:132824600-132832000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:132824600-132832800	Weak transcription	Fetal Thymus	thymus
49	chr6:132824600-132832800	Weak transcription	NH-A	brain
50	chr6:132824600-132833000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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