Variant report

Variant	rs17192117
Chromosome Location	chr6:132797907-132797908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132792086..132794954-chr6:132796926..132799443,2	K562	blood:
2	chr6:132780979..132783540-chr6:132797248..132799636,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs17061361	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs1856352	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4895940	0.86[EUR][1000 genomes]
rs4895941	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs4897588	0.86[EUR][1000 genomes]
rs4897589	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58115479	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62424914	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62424917	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62424918	0.86[EUR][1000 genomes]
rs62424919	0.86[EUR][1000 genomes]
rs62424931	0.88[EUR][1000 genomes]
rs62424935	0.82[EUR][1000 genomes]
rs6906663	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs6909378	0.86[EUR][1000 genomes]
rs6931831	0.86[EUR][1000 genomes]
rs6936401	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs6939077	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs7757421	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs7758170	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs7758434	0.86[EUR][1000 genomes]
rs9483468	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs9483470	0.83[EUR][1000 genomes]
rs9483473	0.83[EUR][1000 genomes]
rs9493339	0.88[EUR][1000 genomes]
rs9493342	0.83[EUR][1000 genomes]
rs9493343	0.83[EUR][1000 genomes]
rs9493344	0.86[EUR][1000 genomes]
rs9493345	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132768000-132799600	Weak transcription	Psoas Muscle	Psoas
2	chr6:132778000-132799400	Weak transcription	Fetal Heart	heart
3	chr6:132778200-132810800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:132784200-132822000	Weak transcription	Thymus	Thymus
5	chr6:132784400-132799800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:132785200-132811200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:132786200-132800000	Weak transcription	Right Ventricle	heart
8	chr6:132786200-132805200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:132786600-132799400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:132786600-132799600	Weak transcription	Right Atrium	heart
11	chr6:132787200-132811800	Weak transcription	Colonic Mucosa	Colon
12	chr6:132787600-132804800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:132788400-132799800	Weak transcription	Spleen	Spleen
14	chr6:132788400-132804800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:132788600-132799400	Strong transcription	Primary B cells from peripheral blood	blood
16	chr6:132788600-132800000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:132788800-132799800	Weak transcription	Ovary	ovary
18	chr6:132788800-132802200	Weak transcription	NHEK	skin
19	chr6:132789400-132802200	Weak transcription	Esophagus	oesophagus
20	chr6:132789400-132811000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:132789600-132798600	Weak transcription	Gastric	stomach
22	chr6:132789600-132804600	Weak transcription	Brain Angular Gyrus	brain
23	chr6:132789600-132804800	Weak transcription	HUVEC	blood vessel
24	chr6:132790000-132799600	Weak transcription	K562	blood
25	chr6:132790400-132804800	Weak transcription	HMEC	breast
26	chr6:132790600-132799800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:132791000-132811200	Weak transcription	Fetal Brain Female	brain
28	chr6:132791200-132799400	Weak transcription	Brain Substantia Nigra	brain
29	chr6:132791200-132799600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:132791200-132799800	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:132791200-132799800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:132791200-132803800	Weak transcription	Fetal Muscle Leg	muscle
33	chr6:132791200-132803800	Weak transcription	NHLF	lung
34	chr6:132791200-132809000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr6:132791200-132810600	Weak transcription	Aorta	Aorta
36	chr6:132791200-132810600	Weak transcription	Lung	lung
37	chr6:132791200-132811200	Weak transcription	Pancreas	Pancrea
38	chr6:132791200-132813000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:132791200-132818200	Weak transcription	Brain Germinal Matrix	brain
40	chr6:132791200-132821000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:132791400-132803400	Weak transcription	Fetal Kidney	kidney
42	chr6:132791400-132804800	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr6:132791800-132814800	Weak transcription	HSMMtube	muscle
44	chr6:132792800-132801400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr6:132792800-132802200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr6:132793000-132800800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:132793000-132803800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:132793200-132799400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr6:132793200-132802800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:132793200-132811800	Weak transcription	Small Intestine	intestine

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