Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10743114	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10743115	0.90[EUR][1000 genomes]
rs10770047	0.81[CEU][hapmap]
rs10770053	0.84[EUR][1000 genomes]
rs10840274	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs10840276	0.88[ASN][1000 genomes]
rs10840279	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11042452	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11042453	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11042454	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12273601	0.85[CEU][hapmap]
rs12361442	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2060477	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2082807	0.82[ASN][1000 genomes]
rs4910483	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7105378	0.84[EUR][1000 genomes]
rs7109585	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7118466	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7118581	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs715333	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs737617	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7950021	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1865558	SWAP70	Cis_1M	lymphoblastoid	RTeQTL
rs1865558	SWAP70	cis	multi-tissue	Pritchard

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9646800-9650600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr11:9646800-9650600	Enhancers	GM12878-XiMat	blood
3	chr11:9647600-9652400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr11:9647800-9652200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:9647800-9654800	Weak transcription	Primary B cells from cord blood	blood
6	chr11:9648400-9650600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:9648600-9650600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:9648800-9650800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr11:9649400-9650600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:9649400-9650600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr11:9649800-9650600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:9649800-9651000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr11:9650200-9651000	Enhancers	Primary B cells from peripheral blood	blood
14	chr11:9650400-9651000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:9650400-9651000	Enhancers	Spleen	Spleen

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