Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10743114	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10743115	0.94[EUR][1000 genomes]
rs10770047	0.82[CEU][hapmap]
rs10770052	0.80[ASN][1000 genomes]
rs10770053	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10840274	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs10840276	0.89[ASN][1000 genomes]
rs10840279	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11042452	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042453	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042454	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12273601	0.86[CEU][hapmap]
rs12361442	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1865558	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2060477	0.85[EUR][1000 genomes]
rs2082806	0.80[EUR][1000 genomes]
rs2082807	0.83[ASN][1000 genomes]
rs4910483	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7105378	0.83[EUR][1000 genomes]
rs7109585	0.84[EUR][1000 genomes]
rs7118466	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7118581	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7124238	0.81[EUR][1000 genomes]
rs737617	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7950021	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs715333	SWAP70	Cis_1M	lymphoblastoid	RTeQTL
rs715333	SWAP70	cis	multi-tissue	Pritchard

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9647600-9652400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr11:9647800-9652200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr11:9647800-9654800	Weak transcription	Primary B cells from cord blood	blood
4	chr11:9648800-9650800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:9649800-9651000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:9650200-9651000	Enhancers	Primary B cells from peripheral blood	blood
7	chr11:9650400-9651000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:9650400-9651000	Enhancers	Spleen	Spleen
9	chr11:9650600-9651000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:9650600-9651000	Flanking Active TSS	GM12878-XiMat	blood

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