Variant report

Variant	rs7105378
Chromosome Location	chr11:9644533-9644534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10743114	0.82[EUR][1000 genomes]
rs10743115	0.81[EUR][1000 genomes]
rs10840274	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11042452	0.84[EUR][1000 genomes]
rs11042453	0.82[EUR][1000 genomes]
rs11042454	0.85[EUR][1000 genomes]
rs12273601	0.82[EUR][1000 genomes]
rs12361442	0.81[EUR][1000 genomes]
rs1865558	0.84[EUR][1000 genomes]
rs2060477	0.92[EUR][1000 genomes]
rs7109585	0.92[EUR][1000 genomes]
rs7118466	0.92[EUR][1000 genomes]
rs7118581	0.92[EUR][1000 genomes]
rs7124238	0.85[EUR][1000 genomes]
rs715333	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7105378	SWAP70	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9635400-9646400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:9636400-9647400	Weak transcription	Right Atrium	heart
3	chr11:9637000-9646800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:9637200-9644600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:9638200-9646600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:9638600-9646600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:9639800-9648600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:9640000-9646800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:9641600-9647800	Weak transcription	HSMMtube	muscle
10	chr11:9641800-9645600	Weak transcription	Spleen	Spleen
11	chr11:9641800-9645800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:9642000-9646800	Weak transcription	GM12878-XiMat	blood
13	chr11:9642200-9645600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr11:9642200-9646000	Weak transcription	Primary B cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links