Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9641519..9643147-chr11:9645260..9647236,2	MCF-7	breast:
2	chr11:9639664..9642964-chr11:9645191..9649077,5	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10743114	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10743115	0.82[EUR][1000 genomes]
rs10770043	0.83[JPT][hapmap]
rs10770047	0.90[CEU][hapmap];0.83[JPT][hapmap]
rs10840270	0.83[JPT][hapmap]
rs10840274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs11042452	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11042453	0.82[EUR][1000 genomes]
rs11042454	0.85[EUR][1000 genomes]
rs12273601	0.95[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs12361442	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12420438	0.83[JPT][hapmap]
rs1865558	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2060477	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289074	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs57701122	0.98[ASN][1000 genomes]
rs7105378	0.92[EUR][1000 genomes]
rs7109545	1.00[ASN][1000 genomes]
rs7118466	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118581	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124238	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs715333	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7109585	SWAP70	Cis_1M	lymphoblastoid	RTeQTL
rs7109585	SWAP70	cis	multi-tissue	Pritchard

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9635400-9646400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:9636400-9647400	Weak transcription	Right Atrium	heart
3	chr11:9637000-9646800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:9638200-9646600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:9638600-9646600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr11:9639800-9648600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:9640000-9646800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:9641600-9647800	Weak transcription	HSMMtube	muscle
9	chr11:9641800-9645600	Weak transcription	Spleen	Spleen
10	chr11:9641800-9645800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:9642000-9646800	Weak transcription	GM12878-XiMat	blood
12	chr11:9642200-9645600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr11:9642200-9646000	Weak transcription	Primary B cells from cord blood	blood
14	chr11:9645000-9646200	Weak transcription	Primary monocytes fromperipheralblood	blood

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