The 2.0 version of rSNPBase

Variant report

Variant rs1866399
Chromosome Location chr15:41571139-41571140
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:41524200-41575800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr15:41525200-41575400 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr15:41525800-41575200 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr15:41536600-41573600 Weak transcription Placenta Amnion Placenta Amnion
5 chr15:41542800-41572000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
6 chr15:41543000-41575200 Weak transcription Primary T killer naive cells fromperipheralblood blood
7 chr15:41545000-41571400 Weak transcription H9 Cell Line embryonic stem cell
8 chr15:41549200-41575200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr15:41550400-41571400 Weak transcription Right Ventricle heart
10 chr15:41550400-41575600 Weak transcription Fetal Brain Male brain
11 chr15:41552400-41574600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr15:41552600-41575200 Weak transcription GM12878-XiMat blood
13 chr15:41552800-41575800 Weak transcription Primary hematopoietic stem cells blood
14 chr15:41554600-41573000 Strong transcription Primary neutrophils fromperipheralblood blood
15 chr15:41556400-41571600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr15:41556400-41574400 Strong transcription Monocytes-CD14+_RO01746 blood
17 chr15:41556800-41571600 Weak transcription Thymus Thymus
18 chr15:41556800-41571800 Weak transcription iPS-15b Cell Line embryonic stem cell
19 chr15:41556800-41572600 Strong transcription Primary monocytes fromperipheralblood blood
20 chr15:41556800-41573200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr15:41556800-41575200 Weak transcription ES-I3 Cell Line embryonic stem cell
22 chr15:41556800-41575200 Weak transcription Primary T killer memory cells from peripheral blood blood
23 chr15:41556800-41575400 Weak transcription Psoas Muscle Psoas
24 chr15:41556800-41575800 Weak transcription ES-WA7 Cell Line embryonic stem cell
25 chr15:41556800-41575800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr15:41557000-41575400 Weak transcription Fetal Heart heart
27 chr15:41557200-41575200 Weak transcription Primary T helper naive cells fromperipheralblood blood
28 chr15:41557200-41575200 Weak transcription Primary T helper cells PMA-I stimulated --
29 chr15:41557400-41571600 Weak transcription Rectal Smooth Muscle rectum
30 chr15:41557800-41572800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr15:41559000-41571600 Weak transcription Colon Smooth Muscle Colon
32 chr15:41559000-41575400 Weak transcription Brain Germinal Matrix brain
33 chr15:41561200-41572600 Strong transcription Duodenum Mucosa Duodenum
34 chr15:41561600-41572600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr15:41561600-41572800 Strong transcription Adipose Nuclei Adipose
36 chr15:41561800-41572600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr15:41562000-41572600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr15:41562000-41572600 Strong transcription Fetal Stomach stomach
39 chr15:41562000-41573200 Strong transcription Fetal Adrenal Gland Adrenal Gland
40 chr15:41562000-41574000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr15:41562400-41572600 Strong transcription Fetal Muscle Trunk muscle
42 chr15:41562800-41572600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
43 chr15:41563000-41571600 Weak transcription Primary T regulatory cells fromperipheralblood blood
44 chr15:41563000-41575400 Weak transcription Brain Hippocampus Middle brain
45 chr15:41564000-41575400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr15:41564000-41575400 Weak transcription HUVEC blood vessel
47 chr15:41564200-41575200 Weak transcription Primary T helper cells fromperipheralblood blood
48 chr15:41564200-41575400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr15:41564200-41576200 Weak transcription Small Intestine intestine
50 chr15:41564600-41572000 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015