The 2.0 version of rSNPBase

Variant report

Variant rs28716689
Chromosome Location chr15:41578807-41578808
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:41577000-41582400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr15:41577400-41584600 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr15:41577400-41610600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr15:41577600-41579200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr15:41577600-41579800 Genic enhancers Primary T helper memory cells from peripheral blood 1 blood
6 chr15:41577600-41580000 Genic enhancers Primary monocytes fromperipheralblood blood
7 chr15:41577600-41581200 Genic enhancers Primary B cells from cord blood blood
8 chr15:41577600-41581200 Genic enhancers Primary T helper naive cells from peripheral blood blood
9 chr15:41577600-41581200 Genic enhancers Primary T helper cells fromperipheralblood blood
10 chr15:41577600-41606400 Weak transcription Stomach Mucosa stomach
11 chr15:41577800-41579000 Weak transcription NHLF lung
12 chr15:41577800-41579200 Weak transcription Brain Cingulate Gyrus brain
13 chr15:41577800-41579200 Weak transcription Gastric stomach
14 chr15:41577800-41579200 Genic enhancers HSMM muscle
15 chr15:41577800-41579400 Weak transcription Psoas Muscle Psoas
16 chr15:41577800-41579400 Weak transcription Thymus Thymus
17 chr15:41577800-41579800 Strong transcription Fetal Muscle Trunk muscle
18 chr15:41577800-41579800 Strong transcription Left Ventricle heart
19 chr15:41577800-41580400 Weak transcription Spleen Spleen
20 chr15:41577800-41580600 Strong transcription Stomach Smooth Muscle stomach
21 chr15:41577800-41581200 Genic enhancers Primary T helper memory cells from peripheral blood 2 blood
22 chr15:41577800-41581200 Transcr. at gene 5' and 3' GM12878-XiMat blood
23 chr15:41577800-41581600 Strong transcription Placenta Placenta
24 chr15:41577800-41581800 Genic enhancers Primary T cells fromperipheralblood blood
25 chr15:41577800-41583600 Weak transcription Aorta Aorta
26 chr15:41577800-41583800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
27 chr15:41577800-41589000 Weak transcription Esophagus oesophagus
28 chr15:41577800-41591600 Weak transcription Pancreatic Islets Pancreatic Islet
29 chr15:41578000-41579000 Genic enhancers Primary T helper cells PMA-I stimulated --
30 chr15:41578000-41579000 Strong transcription Muscle Satellite Cultured Cells --
31 chr15:41578000-41579000 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
32 chr15:41578000-41579000 Weak transcription Brain Substantia Nigra brain
33 chr15:41578000-41579000 Strong transcription Osteobl bone
34 chr15:41578000-41579200 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr15:41578000-41579200 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr15:41578000-41579200 Strong transcription Colon Smooth Muscle Colon
37 chr15:41578000-41579400 Genic enhancers Primary neutrophils fromperipheralblood blood
38 chr15:41578000-41579400 Strong transcription Primary B cells from peripheral blood blood
39 chr15:41578000-41579400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
40 chr15:41578000-41579400 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
41 chr15:41578000-41579400 Weak transcription Rectal Smooth Muscle rectum
42 chr15:41578000-41580200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
43 chr15:41578000-41580200 Weak transcription HSMMtube muscle
44 chr15:41578000-41580400 Weak transcription Brain Hippocampus Middle brain
45 chr15:41578000-41580400 Weak transcription Ovary ovary
46 chr15:41578000-41580600 Strong transcription Rectal Mucosa Donor 29 rectum
47 chr15:41578000-41581000 Strong transcription Fetal Intestine Small intestine
48 chr15:41578000-41581000 Weak transcription Right Ventricle heart
49 chr15:41578000-41581200 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr15:41578000-41581200 Genic enhancers Primary T helper naive cells fromperipheralblood blood

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015