Variant report

Variant	rs1874816
Chromosome Location	chr1:77986413-77986414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17100819	1.00[CEU][hapmap]
rs61777063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777070	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778697	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61778699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778708	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61784764	0.88[AMR][1000 genomes]
rs61784767	0.94[AMR][1000 genomes]
rs61784770	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61784771	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61784772	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6603957	1.00[CEU][hapmap]
rs6659285	1.00[CEU][hapmap]
rs6660964	1.00[CEU][hapmap]
rs6662245	1.00[CEU][hapmap]
rs6678173	0.82[AMR][1000 genomes]
rs7525538	1.00[CEU][hapmap]
rs7546605	1.00[CEU][hapmap]
rs7550587	1.00[CEU][hapmap]
rs7555421	1.00[CEU][hapmap]
rs7555864	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv871143	chr1:77955577-78031994	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77980800-77999400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:77981800-77987200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:77981800-77987400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:77981800-77987400	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:77981800-77998400	Weak transcription	Osteobl	bone
6	chr1:77981800-77999200	Weak transcription	NHLF	lung
7	chr1:77981800-77999400	Weak transcription	HSMMtube	muscle
8	chr1:77982000-77998200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:77982000-77998200	Weak transcription	Brain Angular Gyrus	brain
10	chr1:77982200-77998200	Weak transcription	Brain Anterior Caudate	brain
11	chr1:77982400-77987200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:77983000-77987200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:77983000-78009200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:77984600-77991200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr1:77984600-77996400	Strong transcription	NHDF-Ad	bronchial
16	chr1:77984800-77986600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr1:77984800-77987800	Weak transcription	Primary T cells from cord blood	blood
18	chr1:77984800-77988000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:77984800-77988600	Strong transcription	Brain Inferior Temporal Lobe	brain
20	chr1:77984800-77991600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr1:77984800-77991600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr1:77985000-77988600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr1:77985000-77991200	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr1:77985200-77987200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr1:77985200-77999400	Weak transcription	Brain Substantia Nigra	brain
26	chr1:77985400-77987600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:77985400-77999800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr1:77985800-77988000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr1:77986000-77986600	Strong transcription	HSMM	muscle
30	chr1:77986200-77987200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:77986400-77988000	Weak transcription	Brain Cingulate Gyrus	brain

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