Variant report

Variant	rs61778702
Chromosome Location	chr1:77968736-77968737
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:77966991..77969632-chr1:77973867..77975954,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1874816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777063	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777064	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777065	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777066	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777068	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777069	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777071	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778697	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61778699	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778700	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778707	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778708	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61784764	0.88[AMR][1000 genomes]
rs61784767	0.94[AMR][1000 genomes]
rs61784770	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61784771	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61784772	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6678173	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv871143	chr1:77955577-78031994	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77956200-77975600	Weak transcription	HSMMtube	muscle
2	chr1:77958200-77974800	Weak transcription	Brain Angular Gyrus	brain
3	chr1:77958400-77974600	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:77958800-77974600	Weak transcription	Brain Anterior Caudate	brain
5	chr1:77958800-77974600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:77960000-77974600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:77960000-77974600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:77962000-77970200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr1:77963800-77974200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:77964000-77974600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:77964800-77970200	Weak transcription	Primary T cells from cord blood	blood
12	chr1:77965200-77969600	Weak transcription	HUVEC	blood vessel
13	chr1:77965200-77969800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:77965200-77970600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:77965200-77970600	Weak transcription	Osteobl	bone
16	chr1:77965400-77971400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:77965400-77974600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:77965400-77974600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:77965800-77974400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr1:77968000-77968800	Strong transcription	HSMM	muscle
21	chr1:77968200-77968800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr1:77968200-77969000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr1:77968600-77973000	Weak transcription	NHDF-Ad	bronchial

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