Variant report

Variant	rs61784767
Chromosome Location	chr1:77934778-77934779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:77931036..77935396-chr1:77935652..77939462,4	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1874816	0.94[AMR][1000 genomes]
rs61777063	0.94[AMR][1000 genomes]
rs61777064	0.94[AMR][1000 genomes]
rs61777065	0.94[AMR][1000 genomes]
rs61777066	0.94[AMR][1000 genomes]
rs61777068	0.94[AMR][1000 genomes]
rs61777069	0.94[AMR][1000 genomes]
rs61777070	0.94[AMR][1000 genomes]
rs61777071	0.94[AMR][1000 genomes]
rs61778697	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61778699	0.94[AMR][1000 genomes]
rs61778700	0.94[AMR][1000 genomes]
rs61778702	0.94[AMR][1000 genomes]
rs61778703	0.94[AMR][1000 genomes]
rs61778704	0.94[AMR][1000 genomes]
rs61778705	0.94[AMR][1000 genomes]
rs61778707	0.94[AMR][1000 genomes]
rs61778708	0.83[AMR][1000 genomes]
rs61784764	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61784770	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61784771	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61784772	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005183	chr1:77728990-77949309	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv535010	chr1:77728990-77949309	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv932557	chr1:77730247-77958687	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1003714	chr1:77756861-77949309	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv462095	chr1:77903611-77951460	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv546592	chr1:77903611-77951460	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77913200-77937000	Weak transcription	Primary T cells from cord blood	blood
2	chr1:77913200-77968400	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:77914600-77955600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:77929400-77935400	Enhancers	Brain Hippocampus Middle	brain
5	chr1:77929400-77935800	Enhancers	Brain Cingulate Gyrus	brain
6	chr1:77929800-77935000	Enhancers	Brain Anterior Caudate	brain
7	chr1:77930200-77938000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:77930400-77935600	Enhancers	Brain Angular Gyrus	brain
9	chr1:77931400-77935600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr1:77932200-77934800	Enhancers	Fetal Intestine Large	intestine
11	chr1:77932400-77935000	Enhancers	Fetal Intestine Small	intestine
12	chr1:77932800-77935000	Enhancers	NHDF-Ad	bronchial
13	chr1:77932800-77935600	Enhancers	Brain Substantia Nigra	brain
14	chr1:77933000-77935600	Enhancers	Fetal Stomach	stomach
15	chr1:77933400-77935400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:77933400-77935600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:77933400-77935600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr1:77933600-77934800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:77933600-77934800	Enhancers	Osteobl	bone
20	chr1:77933600-77935000	Enhancers	Stomach Smooth Muscle	stomach
21	chr1:77933600-77935200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:77933600-77935800	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr1:77933600-77935800	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr1:77933600-77944400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:77934000-77934800	Enhancers	HSMMtube	muscle
26	chr1:77934000-77935000	Enhancers	HSMM	muscle
27	chr1:77934000-77935200	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr1:77934000-77935400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr1:77934200-77935000	Weak transcription	NHLF	lung
30	chr1:77934200-77939000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr1:77934200-77948800	Weak transcription	Right Atrium	heart
32	chr1:77934400-77935200	Enhancers	Muscle Satellite Cultured Cells	--
33	chr1:77934600-77939000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:77934600-77955200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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