Variant report

Variant	rs61777069
Chromosome Location	chr1:77982046-77982047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1874816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777063	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778697	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61778699	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778700	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778702	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778703	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778704	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778705	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778708	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61784764	0.88[AMR][1000 genomes]
rs61784767	0.94[AMR][1000 genomes]
rs61784770	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61784771	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61784772	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6678173	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv871143	chr1:77955577-78031994	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77973600-77983400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:77974600-77982200	Enhancers	NHDF-Ad	bronchial
3	chr1:77978800-77982400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:77978800-77983000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:77979200-77983000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:77979200-77984000	Weak transcription	Primary T cells from cord blood	blood
7	chr1:77979400-77982400	Enhancers	Fetal Muscle Leg	muscle
8	chr1:77980600-77982200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:77980800-77982400	Enhancers	HSMM	muscle
10	chr1:77980800-77999400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:77981000-77982400	Enhancers	Brain Germinal Matrix	brain
12	chr1:77981000-77983000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr1:77981200-77982400	Enhancers	Brain Substantia Nigra	brain
14	chr1:77981200-77982600	Enhancers	Brain Cingulate Gyrus	brain
15	chr1:77981400-77982200	Enhancers	Brain Anterior Caudate	brain
16	chr1:77981400-77982400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr1:77981400-77982400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:77981600-77982200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:77981600-77984000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:77981800-77982200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:77981800-77984200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:77981800-77987200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr1:77981800-77987400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr1:77981800-77987400	Weak transcription	Brain Hippocampus Middle	brain
25	chr1:77981800-77998400	Weak transcription	Osteobl	bone
26	chr1:77981800-77999200	Weak transcription	NHLF	lung
27	chr1:77981800-77999400	Weak transcription	HSMMtube	muscle
28	chr1:77982000-77982200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr1:77982000-77983800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr1:77982000-77984400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr1:77982000-77998200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:77982000-77998200	Weak transcription	Brain Angular Gyrus	brain

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