Variant report

Variant	rs61778699
Chromosome Location	chr1:77961744-77961745
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1874816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777064	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777065	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777066	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777068	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777069	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61777071	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778697	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61778700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778702	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778703	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778704	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778705	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778707	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61778708	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61784764	0.88[AMR][1000 genomes]
rs61784767	0.94[AMR][1000 genomes]
rs61784770	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61784771	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61784772	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6678173	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv871143	chr1:77955577-78031994	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77913200-77968400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr1:77955800-77964400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:77956000-77964600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:77956200-77964000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:77956200-77964200	Weak transcription	NHDF-Ad	bronchial
6	chr1:77956200-77964400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:77956200-77975600	Weak transcription	HSMMtube	muscle
8	chr1:77958200-77974800	Weak transcription	Brain Angular Gyrus	brain
9	chr1:77958400-77961800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:77958400-77974600	Weak transcription	Brain Hippocampus Middle	brain
11	chr1:77958600-77965000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:77958800-77974600	Weak transcription	Brain Anterior Caudate	brain
13	chr1:77958800-77974600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr1:77960000-77968000	Weak transcription	HSMM	muscle
15	chr1:77960000-77974600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:77960000-77974600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:77960200-77961800	Weak transcription	Primary T cells from cord blood	blood
18	chr1:77960800-77963800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:77960800-77964000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:77961200-77963200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr1:77961400-77962400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:77961600-77962000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
23	chr1:77961600-77962200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:77961600-77962400	ZNF genes & repeats	NHLF	lung

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