Variant report

Variant	rs1877399
Chromosome Location	chr4:46937849-46937850
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10018276	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1116736	0.90[EUR][1000 genomes]
rs12505121	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12505347	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12508647	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1398175	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1512137	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16859751	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2280075	0.90[EUR][1000 genomes]
rs28369021	0.90[EUR][1000 genomes]
rs28684796	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3792208	0.90[EUR][1000 genomes]
rs6815456	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6856047	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6856763	0.90[EUR][1000 genomes]
rs7666145	0.90[EUR][1000 genomes]
rs7666667	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7689605	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879002	chr4:46911379-46940376	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46937000-46939600	Weak transcription	NHEK	skin
2	chr4:46937200-46938000	Weak transcription	Fetal Heart	heart
3	chr4:46937800-46938600	Enhancers	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links