Variant report

Variant	rs12505347
Chromosome Location	chr4:46955077-46955078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10018276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10024134	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1116736	0.95[EUR][1000 genomes]
rs12499295	1.00[ASN][1000 genomes]
rs12505121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12508647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509947	0.95[ASN][1000 genomes]
rs1398175	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1398176	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1512127	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1512128	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1512137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16851641	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16859613	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs16859669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16859751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859764	1.00[ASN][1000 genomes]
rs17641147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1877397	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1877399	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1877403	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2280075	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2351168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28369021	0.95[EUR][1000 genomes]
rs28413841	1.00[ASN][1000 genomes]
rs28517766	1.00[ASN][1000 genomes]
rs28684796	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3792208	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6815456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6856763	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7666145	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7666667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676918	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs7678824	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7685553	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7689605	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690061	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7695616	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9291291	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs9291300	0.82[CEU][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46948800-46955200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:46949600-46955200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:46949800-46958400	Weak transcription	Brain Anterior Caudate	brain
4	chr4:46951400-46969400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:46953800-46955400	Enhancers	Fetal Brain Male	brain

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