Variant report

Variant	rs1398176
Chromosome Location	chr4:46950086-46950087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10018276	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10024134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1028005	0.81[YRI][hapmap]
rs12499295	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505121	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12505347	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12508647	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12509947	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1398175	0.82[CEU][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1512127	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1512128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1512137	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16851641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16859669	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16859751	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16859764	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17641147	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1877397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1877403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351168	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28413841	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28517766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28684796	0.87[ASN][1000 genomes]
rs6815456	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6856047	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs6856763	0.82[CEU][hapmap]
rs6858292	0.94[EUR][1000 genomes]
rs7666145	0.82[CEU][hapmap]
rs7666667	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7676918	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7678824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7685553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7689605	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[ASN][1000 genomes]
rs7690061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7695616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9291291	1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9291300	1.00[CEU][hapmap];0.96[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46946000-46950600	Enhancers	Fetal Heart	heart
2	chr4:46947400-46952200	Weak transcription	Right Ventricle	heart
3	chr4:46947600-46952200	Weak transcription	Left Ventricle	heart
4	chr4:46948000-46950200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:46948000-46950400	Enhancers	Fetal Brain Male	brain
6	chr4:46948800-46955200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:46949400-46950200	Enhancers	Fetal Brain Female	brain
8	chr4:46949600-46955200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:46949800-46950600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:46949800-46954400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:46949800-46958400	Weak transcription	Brain Anterior Caudate	brain

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