Variant report

Variant	rs28684796
Chromosome Location	chr4:46952762-46952763
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10018276	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10024134	0.87[ASN][1000 genomes]
rs1116736	0.98[EUR][1000 genomes]
rs12499295	0.87[ASN][1000 genomes]
rs12505121	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12505347	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12508647	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12509947	0.83[ASN][1000 genomes]
rs1398175	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1398176	0.87[ASN][1000 genomes]
rs1512137	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16851641	0.87[ASN][1000 genomes]
rs16859613	0.83[ASN][1000 genomes]
rs16859751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16859764	0.87[ASN][1000 genomes]
rs1877397	0.83[ASN][1000 genomes]
rs1877399	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1877403	0.87[ASN][1000 genomes]
rs2280075	0.98[EUR][1000 genomes]
rs28369021	0.92[EUR][1000 genomes]
rs28413841	0.87[ASN][1000 genomes]
rs28517766	0.87[ASN][1000 genomes]
rs3792208	0.92[EUR][1000 genomes]
rs6815456	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6856047	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6856763	0.98[EUR][1000 genomes]
rs7666145	0.98[EUR][1000 genomes]
rs7666667	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7676918	0.81[ASN][1000 genomes]
rs7685553	0.87[ASN][1000 genomes]
rs7689605	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7695616	0.87[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46948800-46955200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:46949600-46955200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:46949800-46954400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:46949800-46958400	Weak transcription	Brain Anterior Caudate	brain
5	chr4:46950400-46953800	Weak transcription	Fetal Brain Male	brain
6	chr4:46951000-46954400	Enhancers	Fetal Heart	heart
7	chr4:46951400-46969400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links