Variant report

Variant	rs1884136
Chromosome Location	chr20:10850464-10850465
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:10849771..10853957-chr20:10864079..10866581,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11905130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11907137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17261295	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1884137	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2144184	1.00[YRI][hapmap]
rs2327320	0.80[EUR][1000 genomes]
rs6077942	0.89[EUR][1000 genomes]
rs6134068	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66554718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67897813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7261320	0.80[EUR][1000 genomes]
rs73604332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73604333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73604334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73604335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73604336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73604337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73604338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73604339	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73604340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73604341	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73604343	0.85[EUR][1000 genomes]
rs8114726	0.80[EUR][1000 genomes]
rs8114939	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912662	chr20:10823506-10864326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Information processing speed	21130836	GWAS catalog

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10845600-10850600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr20:10845600-10856200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:10846400-10856200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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