Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11905130	0.80[EUR][1000 genomes]
rs11907137	0.80[EUR][1000 genomes]
rs1884136	0.80[EUR][1000 genomes]
rs2327320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6077942	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6134068	0.81[EUR][1000 genomes]
rs66554718	0.80[EUR][1000 genomes]
rs67156063	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67897813	0.80[EUR][1000 genomes]
rs7261320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7267047	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73604332	0.80[EUR][1000 genomes]
rs73604333	0.80[EUR][1000 genomes]
rs73604334	0.80[EUR][1000 genomes]
rs73604335	0.80[EUR][1000 genomes]
rs73604336	0.80[EUR][1000 genomes]
rs73604337	0.80[EUR][1000 genomes]
rs73604338	0.80[EUR][1000 genomes]
rs73604339	0.80[EUR][1000 genomes]
rs73604340	0.80[EUR][1000 genomes]
rs73604341	0.82[EUR][1000 genomes]
rs73604343	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73604345	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8114939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs974265	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10878600-10882600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:10878600-10882600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr20:10878600-10882600	Weak transcription	NHEK	skin
4	chr20:10878600-10883600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr20:10879600-10883000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr20:10879800-10882600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr20:10879800-10883400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr20:10879800-10883600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr20:10880000-10882800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr20:10881400-10891200	Weak transcription	Left Ventricle	heart
11	chr20:10881800-10882200	Weak transcription	Fetal Heart	heart

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