Variant report

Variant	rs6077942
Chromosome Location	chr20:10863674-10863675
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11905130	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11907137	0.89[EUR][1000 genomes]
rs17261295	0.86[EUR][1000 genomes]
rs1884136	0.89[EUR][1000 genomes]
rs1884137	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2327320	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6134068	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66554718	0.89[EUR][1000 genomes]
rs67156063	0.83[EUR][1000 genomes]
rs67897813	0.89[EUR][1000 genomes]
rs7261320	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7267047	0.83[EUR][1000 genomes]
rs73604332	0.89[EUR][1000 genomes]
rs73604333	0.89[EUR][1000 genomes]
rs73604334	0.89[EUR][1000 genomes]
rs73604335	0.89[EUR][1000 genomes]
rs73604336	0.89[EUR][1000 genomes]
rs73604337	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73604338	0.89[EUR][1000 genomes]
rs73604339	0.89[EUR][1000 genomes]
rs73604340	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73604341	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73604343	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73604345	0.83[EUR][1000 genomes]
rs8114726	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8114939	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs974265	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912662	chr20:10823506-10864326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10856800-10877800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:10863600-10864200	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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