Variant report

Variant	rs974265
Chromosome Location	chr20:10882615-10882616
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2327320	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6077942	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6134068	0.80[EUR][1000 genomes]
rs67156063	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7261320	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7267047	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73604341	0.81[EUR][1000 genomes]
rs73604343	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73604345	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8114726	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8114939	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10878600-10883600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr20:10879600-10883000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr20:10879800-10883400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr20:10879800-10883600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr20:10880000-10882800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr20:10881400-10891200	Weak transcription	Left Ventricle	heart
7	chr20:10882200-10883000	Enhancers	Fetal Heart	heart
8	chr20:10882600-10882800	Enhancers	NHEK	skin
9	chr20:10882600-10883000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr20:10882600-10883800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr20:10882600-10883800	Enhancers	Fetal Brain Female	brain
12	chr20:10882600-10884000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr20:10882600-10884200	Enhancers	Brain Germinal Matrix	brain
14	chr20:10882600-10884200	Enhancers	Fetal Lung	lung
15	chr20:10882600-10884600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr20:10882600-10884600	Enhancers	Fetal Stomach	stomach
17	chr20:10882600-10884600	Enhancers	HSMM	muscle
18	chr20:10882600-10884800	Enhancers	Fetal Muscle Leg	muscle
19	chr20:10882600-10885000	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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