Variant report

Variant	rs7267047
Chromosome Location	chr20:10887669-10887670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2327320	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6077942	0.83[EUR][1000 genomes]
rs67156063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7261320	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73604343	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73604345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8114726	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8114939	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs974265	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10881400-10891200	Weak transcription	Left Ventricle	heart
2	chr20:10883800-10889800	Weak transcription	Fetal Kidney	kidney
3	chr20:10883800-10891200	Weak transcription	Aorta	Aorta
4	chr20:10884200-10891200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr20:10885600-10887800	Enhancers	Fetal Stomach	stomach
6	chr20:10886600-10899000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr20:10887200-10887800	Enhancers	NHDF-Ad	bronchial
8	chr20:10887200-10891200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr20:10887400-10887800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr20:10887400-10890600	Weak transcription	Fetal Lung	lung
11	chr20:10887600-10887800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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