Variant report

Variant	rs73604343
Chromosome Location	chr5:151788608-151788609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11905130	0.85[EUR][1000 genomes]
rs11907137	0.85[EUR][1000 genomes]
rs17261295	0.83[EUR][1000 genomes]
rs1884136	0.85[EUR][1000 genomes]
rs1884137	0.83[EUR][1000 genomes]
rs2327320	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6077942	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6134068	0.86[EUR][1000 genomes]
rs66554718	0.85[EUR][1000 genomes]
rs67156063	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67897813	0.85[EUR][1000 genomes]
rs7261320	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7267047	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73604332	0.85[EUR][1000 genomes]
rs73604333	0.85[EUR][1000 genomes]
rs73604334	0.85[EUR][1000 genomes]
rs73604335	0.85[EUR][1000 genomes]
rs73604336	0.85[EUR][1000 genomes]
rs73604337	0.85[EUR][1000 genomes]
rs73604338	0.85[EUR][1000 genomes]
rs73604339	0.85[EUR][1000 genomes]
rs73604340	0.85[EUR][1000 genomes]
rs73604341	0.87[EUR][1000 genomes]
rs73604345	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8114726	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8114939	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs974265	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv883048	chr5:151682439-151846236	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv432814	chr5:151682807-151852807	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv432815	chr5:151682807-151875807	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv432816	chr5:151691807-151875807	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151782800-151790800	Weak transcription	Brain Anterior Caudate	brain

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