Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:10856745..10858884-chr20:10861213..10863486,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11905130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11907137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17261295	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1884136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1884137	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327320	0.80[EUR][1000 genomes]
rs6077942	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6134068	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66554718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67897813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7261320	0.80[EUR][1000 genomes]
rs73604332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73604333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73604334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73604335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73604336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73604337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73604338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73604339	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73604341	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73604343	0.85[EUR][1000 genomes]
rs8114726	0.80[EUR][1000 genomes]
rs8114939	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912662	chr20:10823506-10864326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv965931	chr20:10855702-10860385	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10851000-10863600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr20:10856800-10877800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:10857000-10858600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr20:10857000-10858600	Enhancers	NHDF-Ad	bronchial
5	chr20:10857000-10858800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr20:10857200-10858000	Enhancers	Osteobl	bone
7	chr20:10857200-10858200	Enhancers	Liver	Liver
8	chr20:10857200-10858600	Enhancers	Adipose Nuclei	Adipose
9	chr20:10857400-10857600	Enhancers	NHLF	lung

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