Variant report

Variant	rs1890437
Chromosome Location	chr13:94380785-94380786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93877752..93880297-chr13:94379903..94382162,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183098	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1320551	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890436	0.93[ASN][1000 genomes]
rs1933780	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933781	0.83[EUR][1000 genomes]
rs1933784	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2149225	0.85[ASN][1000 genomes]
rs3904301	0.85[ASN][1000 genomes]
rs4272897	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301888	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4359315	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4572255	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4589418	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4771879	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4771882	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4773757	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4773758	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4773759	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6492675	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6492676	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7323475	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7330971	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7331304	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7982716	1.00[ASN][1000 genomes]
rs7982874	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7984578	0.83[EUR][1000 genomes]
rs7988063	0.83[EUR][1000 genomes]
rs7988294	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9301903	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301904	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524179	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524180	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1039305	chr13:94229672-94398382	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv562753	chr13:94283764-94402110	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv933758	chr13:94299302-94421378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv916694	chr13:94360053-94423063	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv832684	chr13:94379507-94550853	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94378600-94380800	Enhancers	HepG2	liver
2	chr13:94380200-94382200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:94380400-94382200	Weak transcription	HSMM	muscle
4	chr13:94380400-94382200	Weak transcription	HSMMtube	muscle
5	chr13:94380400-94382600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:94380400-94382600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:94380400-94382600	Weak transcription	NH-A	brain
8	chr13:94380400-94382800	Weak transcription	Ovary	ovary
9	chr13:94380600-94382400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:94380600-94382600	Weak transcription	Osteobl	bone
11	chr13:94380600-94382800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr13:94380600-94383200	Weak transcription	Fetal Heart	heart

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