Variant report

Variant	rs1933780
Chromosome Location	chr13:94379059-94379060
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11843715	0.82[YRI][hapmap]
rs1320551	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890436	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1890437	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933781	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1933784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2149225	0.94[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3904301	0.85[ASN][1000 genomes]
rs4238307	0.82[JPT][hapmap]
rs4272897	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301888	0.86[ASW][hapmap];1.00[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4322535	0.82[JPT][hapmap]
rs4359315	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4572255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4589418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4622388	0.82[JPT][hapmap]
rs4628823	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs4771879	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4771882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4773757	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4773758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4773759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6492675	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6492676	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7323475	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7330971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7331304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7982716	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs7982874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7984578	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7988063	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7988294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7998877	0.82[JPT][hapmap]
rs9284273	1.00[GIH][hapmap];0.82[JPT][hapmap]
rs9301903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524197	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes]
rs9589799	0.86[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1039305	chr13:94229672-94398382	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv562753	chr13:94283764-94402110	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv933758	chr13:94299302-94421378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv916694	chr13:94360053-94423063	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94376000-94379200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr13:94376000-94380000	Weak transcription	Liver	Liver
3	chr13:94376200-94379200	Weak transcription	Osteobl	bone
4	chr13:94377800-94380200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:94378000-94379200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:94378400-94379200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:94378400-94379200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr13:94378400-94379200	Enhancers	Ovary	ovary
9	chr13:94378400-94380400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:94378400-94380400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:94378600-94380200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:94378600-94380800	Enhancers	HepG2	liver
13	chr13:94378800-94379600	Weak transcription	Fetal Heart	heart
14	chr13:94378800-94379800	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr13:94378800-94380600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:94378800-94380600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr13:94379000-94379200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:94379000-94379200	Enhancers	NHLF	lung
19	chr13:94379000-94379400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr13:94379000-94380000	Weak transcription	Colon Smooth Muscle	Colon

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