Variant report

Variant	rs2149225
Chromosome Location	chr13:94327023-94327024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1320551	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1890436	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1890437	0.85[ASN][1000 genomes]
rs1933780	0.94[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1933781	0.82[JPT][hapmap]
rs1933784	1.00[JPT][hapmap]
rs3904301	0.93[ASN][1000 genomes]
rs4238307	0.82[JPT][hapmap]
rs4272897	0.85[ASN][1000 genomes]
rs4301888	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4322535	0.82[JPT][hapmap]
rs4359315	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4572255	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4589418	0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4622388	0.82[JPT][hapmap]
rs4771879	0.92[ASN][1000 genomes]
rs4771882	0.94[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4773757	0.85[ASN][1000 genomes]
rs4773758	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4773759	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6492675	0.83[ASN][1000 genomes]
rs6492676	0.94[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7323475	0.83[ASN][1000 genomes]
rs7330971	0.94[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7331304	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7982716	0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs7982874	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7988294	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7998877	0.82[JPT][hapmap]
rs9284273	0.87[GIH][hapmap];0.82[JPT][hapmap]
rs9301903	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9301904	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9524179	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9524180	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9524197	0.87[GIH][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758340	chr13:94174654-94348179	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2759958	chr13:94174654-94348179	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv832683	chr13:94207802-94370926	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1039305	chr13:94229672-94398382	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2753914	chr13:94262199-94340399	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1035144	chr13:94283044-94352174	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv562753	chr13:94283764-94402110	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv933758	chr13:94299302-94421378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1051680	chr13:94300798-94359894	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94324200-94328600	Weak transcription	Aorta	Aorta
2	chr13:94327000-94341800	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links