Variant report

Variant	rs1320551
Chromosome Location	chr13:94380136-94380137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93877752..93880297-chr13:94379903..94382162,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183098	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11843715	0.83[YRI][hapmap]
rs1890436	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1890437	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933780	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933781	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1933784	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2149225	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3904301	0.85[ASN][1000 genomes]
rs4238307	0.82[JPT][hapmap]
rs4272897	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301888	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4322535	0.82[JPT][hapmap]
rs4359315	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4572255	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4589418	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4622388	0.82[JPT][hapmap]
rs4628823	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs4771879	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4771882	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4773757	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4773758	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4773759	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6492675	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6492676	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7323475	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7330971	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7331304	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7982716	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs7982874	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7984578	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7988063	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7988294	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7998877	0.82[JPT][hapmap]
rs9284273	0.82[JPT][hapmap]
rs9301903	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301904	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524179	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524180	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524197	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1039305	chr13:94229672-94398382	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv562753	chr13:94283764-94402110	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv933758	chr13:94299302-94421378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv916694	chr13:94360053-94423063	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv832684	chr13:94379507-94550853	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94377800-94380200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr13:94378400-94380400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:94378400-94380400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr13:94378600-94380200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:94378600-94380800	Enhancers	HepG2	liver
6	chr13:94378800-94380600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:94378800-94380600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr13:94379200-94380200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr13:94379200-94380200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr13:94379200-94380600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr13:94379200-94380600	Enhancers	Osteobl	bone
12	chr13:94379400-94380200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr13:94379600-94380400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:94379800-94380400	Enhancers	HSMM	muscle
15	chr13:94379800-94380400	Enhancers	HSMMtube	muscle
16	chr13:94380000-94380200	Enhancers	Liver	Liver
17	chr13:94380000-94380200	Enhancers	Colon Smooth Muscle	Colon
18	chr13:94380000-94380200	Enhancers	Fetal Heart	heart
19	chr13:94380000-94380200	Enhancers	NHLF	lung
20	chr13:94380000-94380400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr13:94380000-94380400	Enhancers	Ovary	ovary
22	chr13:94380000-94380400	Enhancers	NH-A	brain

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