Variant report

Variant	rs9524197
Chromosome Location	chr13:94410912-94410913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:94403218..94405199-chr13:94408583..94411196,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1320551	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes]
rs1411500	0.82[CHB][hapmap]
rs1890436	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs1933780	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes]
rs1933781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1933784	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2149225	0.87[GIH][hapmap];0.82[JPT][hapmap]
rs4238307	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4301888	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs4322535	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4359315	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs4534700	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4556668	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4572255	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs4589418	1.00[CEU][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs4590994	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4622388	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4628823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4771882	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs4773758	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4773759	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs6492675	1.00[CEU][hapmap];0.93[AMR][1000 genomes]
rs6492676	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs7330971	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.93[AMR][1000 genomes]
rs7331304	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes]
rs7982716	1.00[CEU][hapmap]
rs7982874	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes]
rs7984578	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7988063	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7988294	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes]
rs7998877	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9284273	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9301903	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes]
rs9301904	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs9524179	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs9524180	1.00[CEU][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv933758	chr13:94299302-94421378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv916694	chr13:94360053-94423063	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv832684	chr13:94379507-94550853	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1130	chr13:94410849-94455628	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94400400-94411000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:94403200-94412400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:94403400-94411000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:94403600-94411000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:94409600-94411000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr13:94409800-94411400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr13:94410000-94411400	Enhancers	HepG2	liver
8	chr13:94410000-94411600	Enhancers	HUVEC	blood vessel
9	chr13:94410400-94411200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr13:94410400-94411200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr13:94410400-94411400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr13:94410400-94411400	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr13:94410400-94411600	Enhancers	NH-A	brain
14	chr13:94410600-94411400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr13:94410800-94411000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:94410800-94411400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr13:94410800-94411400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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