The 2.0 version of rSNPBase

Variant report

Variant rs1890818
Chromosome Location chr1:246025350-246025351
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:245991000-246045000 Weak transcription Spleen Spleen
2 chr1:245999800-246038400 Weak transcription Aorta Aorta
3 chr1:246001800-246056800 Weak transcription Primary hematopoietic stem cells blood
4 chr1:246006800-246041200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
5 chr1:246009600-246038200 Weak transcription Duodenum Mucosa Duodenum
6 chr1:246010200-246028200 Weak transcription Thymus Thymus
7 chr1:246012800-246049600 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr1:246014200-246026400 Weak transcription Brain Anterior Caudate brain
9 chr1:246015200-246028000 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr1:246015400-246038200 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr1:246017800-246036400 Weak transcription Right Ventricle heart
12 chr1:246018000-246026000 Weak transcription Primary B cells from cord blood blood
13 chr1:246018200-246026800 Weak transcription Primary B cells from peripheral blood blood
14 chr1:246018400-246026000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr1:246019200-246067400 Weak transcription Primary T helper naive cells fromperipheralblood blood
16 chr1:246020200-246028800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
17 chr1:246020200-246036000 Weak transcription Primary T killer memory cells from peripheral blood blood
18 chr1:246021000-246027200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr1:246021000-246038200 Weak transcription Pancreas Pancrea
20 chr1:246021200-246025400 Enhancers NHLF lung
21 chr1:246021400-246026200 Weak transcription HepG2 liver
22 chr1:246021400-246029400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
23 chr1:246021800-246025400 Enhancers NHDF-Ad bronchial
24 chr1:246022000-246026000 Weak transcription Primary T cells from cord blood blood
25 chr1:246022000-246026600 Weak transcription Dnd41 blood
26 chr1:246022000-246028800 Weak transcription Primary T helper cells PMA-I stimulated --
27 chr1:246022000-246037800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr1:246022000-246038200 Weak transcription Gastric stomach
29 chr1:246022000-246042600 Weak transcription Fetal Intestine Small intestine
30 chr1:246022200-246037800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr1:246022600-246025400 Enhancers Placenta Amnion Placenta Amnion
32 chr1:246023000-246038200 Weak transcription Fetal Kidney kidney
33 chr1:246023600-246032400 Strong transcription K562 blood
34 chr1:246023600-246037000 Weak transcription Lung lung
35 chr1:246023600-246038200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
36 chr1:246023600-246038400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr1:246023800-246025400 Enhancers Ovary ovary
38 chr1:246024000-246025400 Enhancers Colon Smooth Muscle Colon
39 chr1:246024400-246025400 Enhancers Osteobl bone
40 chr1:246024400-246038200 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr1:246024600-246026000 Weak transcription Primary hematopoietic stem cells short term culture blood
42 chr1:246024600-246033000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr1:246024800-246025400 Enhancers Placenta Placenta
44 chr1:246024800-246034800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
45 chr1:246024800-246037400 Weak transcription Muscle Satellite Cultured Cells --
46 chr1:246024800-246037800 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr1:246025000-246025400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr1:246025000-246025600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr1:246025000-246034800 Weak transcription Fetal Stomach stomach
50 chr1:246025000-246036400 Weak transcription Fetal Brain Male brain

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Last update: Aug 31, 2015