Variant report

Variant	rs1891417
Chromosome Location	chr1:71695806-71695807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10493484	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12402425	0.83[GIH][hapmap];0.85[MEX][hapmap]
rs12409826	0.83[GIH][hapmap];0.85[MEX][hapmap]
rs17090804	0.83[ASW][hapmap];0.83[GIH][hapmap];0.83[LWK][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap]
rs17090955	0.97[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs17091031	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2744901	0.83[GIH][hapmap];0.87[TSI][hapmap]
rs2744909	0.83[GIH][hapmap];0.83[TSI][hapmap]
rs2796200	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71694000-71697000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:71695000-71697800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:71695000-71697800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:71695000-71698400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:71695200-71697600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:71695200-71700800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:71695400-71697400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:71695400-71697400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:71695400-71697800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:71695400-71698400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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