Variant report

Variant	rs10493484
Chromosome Location	chr1:71701459-71701460
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10493482	0.81[AFR][1000 genomes]
rs11808123	0.82[YRI][hapmap]
rs12402425	0.83[GIH][hapmap];0.85[MEX][hapmap]
rs12409826	0.83[GIH][hapmap];0.85[MEX][hapmap]
rs17090804	0.91[ASW][hapmap];0.83[GIH][hapmap];0.85[LWK][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap];0.82[YRI][hapmap]
rs17090955	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs17091031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1891417	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2744901	0.83[GIH][hapmap];0.87[TSI][hapmap]
rs2744909	0.83[GIH][hapmap];0.83[TSI][hapmap]
rs2796200	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71699800-71702200	Weak transcription	Ovary	ovary
2	chr1:71700800-71701600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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