Variant report

Variant	rs2796200
Chromosome Location	chr1:71658888-71658889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10493482	0.87[AMR][1000 genomes]
rs10493484	0.97[EUR][1000 genomes]
rs11800532	0.81[AMR][1000 genomes]
rs11801478	0.81[AMR][1000 genomes]
rs11808123	0.81[AMR][1000 genomes]
rs12402425	0.83[GIH][hapmap]
rs12409826	0.83[GIH][hapmap]
rs1418448	0.81[AMR][1000 genomes]
rs17090804	0.83[GIH][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes]
rs17090955	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17091031	0.97[EUR][1000 genomes]
rs1891417	0.97[EUR][1000 genomes]
rs2744901	1.00[ASW][hapmap];0.83[GIH][hapmap];0.89[LWK][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes]
rs2744909	0.93[ASW][hapmap];0.83[GIH][hapmap];0.91[LWK][hapmap];0.86[MEX][hapmap];0.82[MKK][hapmap];0.83[TSI][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2817867	1.00[ASW][hapmap];0.89[LWK][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6699719	0.87[AMR][1000 genomes]
rs72942304	0.81[AMR][1000 genomes]
rs7545836	0.81[AMR][1000 genomes]
rs7554527	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997782	chr1:71628776-71668906	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71658600-71659000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:71658600-71659200	Enhancers	Ovary	ovary
3	chr1:71658800-71659200	Enhancers	Colon Smooth Muscle	Colon
4	chr1:71658800-71659200	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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