Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10493482	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11577923	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11578414	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11800532	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11801478	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11808123	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12402425	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12409826	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1418448	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17090804	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17090955	0.97[AMR][1000 genomes]
rs2744901	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2744903	0.80[EUR][1000 genomes]
rs2744909	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2796200	0.87[AMR][1000 genomes]
rs2817867	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57667850	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59019236	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72942304	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7528792	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7545836	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7554527	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9425051	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521769	chr1:71578442-71633719	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv947533	chr1:71585150-71624438	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv870650	chr1:71590877-71642977	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3362305	chr1:71594980-71631787	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv818211	chr1:71603703-71633719	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71618000-71623800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:71619800-71624400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:71620200-71622800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr1:71621200-71623600	Enhancers	Fetal Lung	lung
5	chr1:71621400-71622200	Enhancers	Colonic Mucosa	Colon
6	chr1:71621400-71623800	Weak transcription	Lung	lung
7	chr1:71621800-71623600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
8	chr1:71621800-71623800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:71622000-71622800	Enhancers	Fetal Intestine Small	intestine

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