Variant report

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr1:71509518-71509784	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:71217715..71220280-chr1:71509356..71511477,2	K562	blood:
2	chr1:71164353..71167028-chr1:71509072..71511419,2	K562	blood:
3	chr1:71509104..71511027-chr1:71511341..71513340,2	MCF-7	breast:
4	chr1:71497365..71498885-chr1:71507254..71510170,2	K562	blood:
5	chr1:71032636..71034814-chr1:71507461..71509971,2	K562	blood:

No data

Variant related genes	Relation type
ZRANB2-AS1	TF binding region
ENSG00000050628	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10493482	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11577923	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11578414	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11800532	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11801478	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11808123	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12402425	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12409826	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1418448	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17090804	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17090955	0.87[AMR][1000 genomes]
rs2744901	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2744903	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2744909	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2817867	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59019236	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6699719	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72942304	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7528792	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7545836	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7554527	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9425051	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv546472	chr1:71432984-71541003	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	555 gene(s)	inside rSNPs	diseases
3	esv1850593	chr1:71444149-71514969	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv871242	chr1:71481050-71519326	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71497600-71510600	Weak transcription	Aorta	Aorta
2	chr1:71503000-71511200	Weak transcription	Pancreas	Pancrea
3	chr1:71505000-71511200	Weak transcription	Gastric	stomach
4	chr1:71508400-71510600	Weak transcription	NHDF-Ad	bronchial
5	chr1:71508800-71512400	Active TSS	K562	blood
6	chr1:71509000-71512200	Active TSS	Adipose Nuclei	Adipose
7	chr1:71509400-71510200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:71509400-71510400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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