Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71654729..71657445-chr1:71668068..71670402,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10493482	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs10493484	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11578414	0.83[AMR][1000 genomes]
rs11800532	0.90[AMR][1000 genomes]
rs11801478	0.90[AMR][1000 genomes]
rs11808123	0.90[AMR][1000 genomes]
rs12402425	0.83[GIH][hapmap];0.85[MEX][hapmap];0.83[AMR][1000 genomes]
rs12409826	0.83[GIH][hapmap];0.85[MEX][hapmap];0.83[AMR][1000 genomes]
rs1418448	0.90[AMR][1000 genomes]
rs17090804	0.91[ASW][hapmap];0.83[GIH][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes]
rs17091031	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1891417	0.97[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2744901	0.83[GIH][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes]
rs2744909	0.83[GIH][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes]
rs2796200	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2817867	0.81[AMR][1000 genomes]
rs57667850	0.87[AMR][1000 genomes]
rs59019236	0.83[AMR][1000 genomes]
rs6699719	0.97[AMR][1000 genomes]
rs72942304	0.90[AMR][1000 genomes]
rs7528792	0.87[AMR][1000 genomes]
rs7545836	0.90[AMR][1000 genomes]
rs7554527	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71665600-71672400	Weak transcription	Pancreas	Pancrea

Quick Search: