Variant report

Variant	rs11800532
Chromosome Location	chr1:71572408-71572409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10493482	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11577923	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11578414	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11801478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11808123	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12402425	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12409826	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1418448	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17090804	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17090955	0.90[AMR][1000 genomes]
rs2744901	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2744903	0.85[EUR][1000 genomes]
rs2744909	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2796200	0.81[AMR][1000 genomes]
rs2817867	1.00[CEU][hapmap];0.83[GIH][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57667850	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59019236	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6699719	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72942304	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7528792	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7545836	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7554527	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9425051	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71572200-71573000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:71572400-71572800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:71572400-71572800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:71572400-71573000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:71572400-71573000	Enhancers	Brain Substantia Nigra	brain

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